Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC099336.2-201ENST00000422457 254 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RPS17P13-201ENST00000448974 407 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC239809.1-201ENST00000450470 217 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC099560.2-201ENST00000457554 255 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC116533.1-201ENST00000459748 321 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RPL21P8-201ENST00000465083 535 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AL122020.1-201ENST00000472287 459 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC022215.1-201ENST00000481770 362 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 GZMAP1-201ENST00000503054 631 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RN7SKP238-201ENST00000516483 249 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-789P-201ENST00000517105 102 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 IGLVIV-53-201ENST00000520107 367 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AL049779.2-201ENST00000553847 315 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC007956.1-201ENST00000555623 542 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MIR3154-201ENST00000577829 84 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC110743.1-201ENST00000584870 478 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MIR5692C1-201ENST00000585309 91 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC008507.3-201ENST00000585753 472 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC011626.1-201ENST00000604710 562 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC012443.1-201ENST00000605605 231 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MIR7109-201ENST00000613748 65 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AL355810.1-201ENST00000614629 552 ntBASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
HIF3AQ9Y2N7 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC233263.6-201ENST00000631132 1963 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.2-201ENST00000362330 96 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-1127P-201ENST00000384580 107 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-387P-201ENST00000411331 105 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 RPL7P37-201ENST00000425095 738 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 BX276092.6-201ENST00000430476 250 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 RPL35AP22-201ENST00000436855 335 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC005094.1-201ENST00000440420 368 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 ATP5LP2-201ENST00000440646 311 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 BX276092.8-201ENST00000455722 250 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AP002812.1-201ENST00000495378 474 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC009901.1-201ENST00000506703 541 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC074255.1-201ENST00000511259 501 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC021146.3-201ENST00000511911 260 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AL161637.1-201ENST00000622380 412 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 AC009951.1-201ENST00000623674 2614 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 MTND5P7-201ENST00000413558 1798 ntBASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
HIF3AQ9Y2N7 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC008758.3-201ENST00000507003 1829 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 ZNF33CP-201ENST00000432492 2030 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 AC074029.4-201ENST00000624796 1859 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 COX6B1P3-201ENST00000312310 260 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.222-201ENST00000364264 102 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.515-201ENST00000384535 112 ntBASIC5.18□□□□□ -1.58
HIF3AQ9Y2N7 RNU6-33P-201ENST00000384793 107 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms