Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TMSB4XP1-201ENST00000424567 135 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 NEK4P1-201ENST00000433383 879 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AL136126.1-201ENST00000473603 402 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC084024.2-201ENST00000503480 791 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 PRELID3BP6-201ENST00000503839 571 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 MIR5708-201ENST00000579723 85 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 BNIP3P33-201ENST00000598912 569 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 GAS5-AS1-201ENST00000602767 694 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC096947.1-201ENST00000603233 470 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC113368.1-201ENST00000603736 382 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 IGHV3-29-201ENST00000604817 344 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 YPEL5P2-201ENST00000605553 359 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC097504.2-201ENST00000608088 454 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC096577.2-201ENST00000611455 153 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC022306.3-201ENST00000619930 550 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 AC007256.1-201ENST00000392253 2765 ntBASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS54Q9P1Q0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 RNU6-263P-201ENST00000363811 107 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 SNORA7.4-201ENST00000384249 137 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 EIF5P1-201ENST00000400019 1231 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MTCO1P56-201ENST00000401674 224 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 RNU4-47P-201ENST00000410876 114 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 BOLA3P4-201ENST00000418151 400 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MTND2P16-201ENST00000419987 799 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 RPS15AP6-201ENST00000420703 385 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 HSFY7P-201ENST00000432672 318 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 HSFY8P-201ENST00000437934 318 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 SDR42E1P3-201ENST00000438345 502 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MTCYBP31-201ENST00000438855 1122 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC104978.1-201ENST00000449387 391 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC104073.1-201ENST00000451988 151 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 HSFY5P-201ENST00000453726 309 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 RN7SL807P-201ENST00000470923 297 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 CAB39P1-201ENST00000502277 460 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC021146.5-201ENST00000503544 545 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MTCYBP37-201ENST00000510642 1133 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MTCO3P44-201ENST00000510977 541 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 DEFB130C-202ENST00000530001 230 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 PDCL2P2-201ENST00000533651 189 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 LSM6P2-201ENST00000552208 177 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC093519.1-201ENST00000566109 298 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 CCDC58P3-201ENST00000590792 430 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 SNRPGP15-201ENST00000600149 222 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC006254.3-201ENST00000603353 884 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC011468.4-201ENST00000603942 409 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC112220.2-201ENST00000605513 533 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AL139022.2-201ENST00000606934 443 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AL513477.2-201ENST00000607858 568 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AC009237.15-201ENST00000610252 501 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AL591516.1-201ENST00000611326 274 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 AP003485.1-201ENST00000625093 753 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 ZNF663P-202ENST00000641770 1131 ntBASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS54Q9P1Q0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNVU1-3-201ENST00000364313 161 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNU6-707P-201ENST00000364647 95 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNU6-224P-201ENST00000384055 107 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 Y_RNA.493-201ENST00000384422 102 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 SNORD67-201ENST00000390833 111 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AL079342.2-201ENST00000403367 482 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNA5SP293-201ENST00000410527 113 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RNU4-78P-201ENST00000410940 126 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 SETP5-201ENST00000437270 562 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 RPS12P18-201ENST00000442381 270 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.59□□□□□ -1.83
VPS54Q9P1Q0 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms