Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 snoU13.4-201ENST00000458916 104 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 RNA5SP233-201ENST00000459153 113 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 SYPL1P1-201ENST00000473622 768 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 RN7SL504P-201ENST00000494496 287 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC005351.1-201ENST00000511152 786 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 ACTR6P1-201ENST00000514311 1104 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 SNORA31.20-201ENST00000517111 133 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 RN7SKP57-201ENST00000517248 293 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC025884.1-201ENST00000556034 378 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC092474.3-201ENST00000603022 568 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AP004247.3-201ENST00000608682 624 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AL592494.3-201ENST00000609485 464 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC022306.1-201ENST00000560489 1562 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 AC069528.2-201ENST00000624849 1991 ntBASIC1.41□□□□□ -2.18
LINC00643Q86TS7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC1.41□□□□□ -2.18
LINC00643Q86TS7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.18
LINC00643Q86TS7 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.18
LINC00643Q86TS7 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.4□□□□□ -2.18
LINC00643Q86TS7 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC1.4□□□□□ -2.18
LINC00643Q86TS7 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 SNORA38-201ENST00000363946 132 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 RPL21P17-201ENST00000397467 475 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 RNA5SP21-201ENST00000410917 96 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC003087.1-201ENST00000412828 499 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 RPL35AP22-201ENST00000436855 335 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 RPL32P34-201ENST00000486380 400 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 LINC00888-204ENST00000487386 421 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 EIF4EP3-201ENST00000498782 656 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC004062.1-201ENST00000509926 645 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC118942.1-201ENST00000529674 1035 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AL049874.4-201ENST00000557593 255 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC115085.1-201ENST00000588924 229 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AL096840.1-201ENST00000603287 93 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC009314.1-201ENST00000603871 304 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC005972.3-201ENST00000606304 481 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC007620.3-201ENST00000608131 497 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC107214.2-201ENST00000608204 634 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AL159169.3-201ENST00000608871 561 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 MIR6780B-201ENST00000610307 79 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 SDR42E1P2-201ENST00000614861 481 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 MIR6864-201ENST00000617935 70 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 SDR42E1P4-201ENST00000620894 481 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC068880.5-201ENST00000624331 290 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC244258.1-201ENST00000637553 1071 ntBASIC1.4□□□□□ -2.19
LINC00643Q86TS7 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
LINC00643Q86TS7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL049781.1-201ENST00000623195 3585 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 RNA5SP505-201ENST00000364748 108 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 RNU6-234P-201ENST00000365229 104 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 U3.22-201ENST00000391120 215 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC092642.1-201ENST00000392417 425 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL138827.1-201ENST00000402666 306 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 CIR1P3-201ENST00000405137 479 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 HNRNPDP2-201ENST00000406475 478 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL513475.1-201ENST00000406602 315 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 RPL21P32-201ENST00000419877 477 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 ARL2BPP3-201ENST00000421226 480 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 UBE2V1P13-201ENST00000436983 439 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AL031663.1-201ENST00000437445 219 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC073522.1-201ENST00000483312 377 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC1.39□□□□□ -2.19
LINC00643Q86TS7 COL6A4P2-205ENST00000509855 506 ntBASIC1.39□□□□□ -2.19
LINC00643Q86TS7 AC006499.2-201ENST00000513470 337 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms