Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 AC009101.1-201ENST00000568135 242 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 AC090948.1-201ENST00000607464 549 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 OR10AB1P-201ENST00000609613 938 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 AC091304.9-201ENST00000612091 226 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 FAM91A3P-201ENST00000456826 2544 ntBASIC4.3□□□□□ -1.72
PTCHD3Q3KNS1 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 U8.3-201ENST00000363321 132 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RNA5SP28-201ENST00000363841 119 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 MIR1250-201ENST00000408098 113 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RNU2-15P-201ENST00000410692 191 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RNU2-8P-201ENST00000410727 190 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL359704.1-201ENST00000411586 781 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC004987.3-201ENST00000413879 771 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL356387.2-201ENST00000422272 243 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC073587.1-201ENST00000447093 876 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC109327.1-201ENST00000471666 403 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 Y_RNA.672-201ENST00000516289 104 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RNU2-46P-201ENST00000517038 113 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RN7SKP234-201ENST00000517173 224 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 RPL23AP97-201ENST00000568955 471 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 HMGN1P30-201ENST00000589286 268 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 DUXAP4-201ENST00000603046 613 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL590392.1-201ENST00000604960 446 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC024941.1-201ENST00000612250 334 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL592295.2-201ENST00000612578 206 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL138721.1-201ENST00000616756 179 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 LINC00901.1-201ENST00000617252 152 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC009159.1-201ENST00000618386 642 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AL023881.1-201ENST00000621088 301 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC124864.2-201ENST00000624736 186 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 AC006971.1-201ENST00000407916 4486 ntBASIC4.29□□□□□ -1.72
PTCHD3Q3KNS1 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 Y_RNA.234-201ENST00000364409 97 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 U3.29-201ENST00000391296 212 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PIGFP2-201ENST00000421400 651 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 RSL24D1P6-201ENST00000426934 401 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PSMA2P3-201ENST00000429685 675 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 MTCYBP45-201ENST00000435243 565 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC114495.1-201ENST00000441274 436 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 PSPHP1-201ENST00000450062 261 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 FGF7P6-202ENST00000451282 293 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 RPS20P24-201ENST00000457473 361 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 RPL37P6-202ENST00000464216 403 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC053481.1-201ENST00000467217 306 ntBASIC4.28□□□□□ -1.72
PTCHD3Q3KNS1 AC068587.1-201ENST00000483613 781 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms