Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 RPL36AP51-201ENST00000487216 318 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 PARP4P3-201ENST00000510265 317 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 Y_RNA.672-201ENST00000516289 104 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.45□□□□□ -1.7
COL4A3Q01955 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A3Q01955 OR4A12P-201ENST00000530847 918 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AL121821.2-201ENST00000556081 394 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC107954.1-201ENST00000565906 727 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 VN1R80P-201ENST00000597126 338 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 Z98200.1-201ENST00000607298 470 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC096577.2-201ENST00000611455 153 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A3Q01955 AC068722.2-201ENST00000618734 544 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC006504.8-201ENST00000621046 635 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 AC063952.1-203ENST00000634410 658 ntBASIC4.45□□□□□ -1.7
COL4A3Q01955 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A3Q01955 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL4A3Q01955 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 RNU6-289P-201ENST00000364093 107 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 Y_RNA.326-201ENST00000365176 113 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AL359643.1-201ENST00000404109 423 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A3Q01955 RNU6-908P-201ENST00000410160 94 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 RNA5SP118-201ENST00000410385 109 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC004938.1-201ENST00000438468 308 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC012671.1-201ENST00000451912 203 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 RNA5SP246-201ENST00000458909 119 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 RPL23AP12-201ENST00000467573 473 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 RPS4XP18-201ENST00000495480 763 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AC108145.1-201ENST00000503770 153 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC008562.1-201ENST00000521763 330 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 TVP23BP1-201ENST00000557500 617 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 AL158801.5-201ENST00000623123 465 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AP006248.2-201ENST00000623309 592 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AC007546.2-201ENST00000623996 360 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 AC112484.5-201ENST00000624189 228 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 AC025125.1-201ENST00000624743 1922 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A3Q01955 CASC19-284ENST00000642142 1868 ntBASIC4.44□□□□□ -1.7
COL4A3Q01955 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A3Q01955 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A3Q01955 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A3Q01955 NMD3P1-201ENST00000439704 1488 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A3Q01955 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.43□□□□□ -1.7
COL4A3Q01955 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A3Q01955 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A3Q01955 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A3Q01955 RNU6-777P-201ENST00000364265 104 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 RNU6-769P-201ENST00000384407 104 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 AC127391.1-201ENST00000411737 98 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.43□□□□□ -1.7
COL4A3Q01955 RPL6P29-201ENST00000414863 865 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 DYNLL1P7-201ENST00000429273 258 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A3Q01955 CBX1P4-201ENST00000439415 457 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A3Q01955 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.43□□□□□ -1.7
COL4A3Q01955 NIPA2P5-201ENST00000452282 464 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 AL445433.1-201ENST00000457507 257 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A3Q01955 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A3Q01955 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A3Q01955 AC034159.1-201ENST00000513885 583 ntBASIC4.43□□□□□ -1.7
COL4A3Q01955 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms