Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 AL606753.1-201ENST00000427435 87 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AL133396.1-201ENST00000432048 687 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 ATP5LP2-201ENST00000440646 311 ntBASIC5.58□□□□□ -1.52
MSX1P28360 NEFMP1-201ENST00000443423 1006 ntBASIC5.58□□□□□ -1.52
MSX1P28360 PCMTD1P1-201ENST00000455560 355 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AC112187.1-201ENST00000455837 479 ntBASIC5.58□□□□□ -1.52
MSX1P28360 LINC01399-202ENST00000458450 244 ntBASIC5.58□□□□□ -1.52
MSX1P28360 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 RNU7-138P-201ENST00000459479 64 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AC053481.1-201ENST00000467217 306 ntBASIC5.58□□□□□ -1.52
MSX1P28360 PPIAP19-201ENST00000486414 492 ntBASIC5.58□□□□□ -1.52
MSX1P28360 RPL23AP40-201ENST00000487630 390 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AC069499.1-201ENST00000489433 509 ntBASIC5.58□□□□□ -1.52
MSX1P28360 MTCO3P44-201ENST00000510977 541 ntBASIC5.58□□□□□ -1.52
MSX1P28360 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX1P28360 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX1P28360 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.58□□□□□ -1.52
MSX1P28360 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 ELOCP5-201ENST00000604924 333 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.58□□□□□ -1.52
MSX1P28360 AC110801.1-201ENST00000623590 212 ntBASIC5.58□□□□□ -1.52
MSX1P28360 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 AC093671.1-201ENST00000624981 2929 ntBASIC5.58□□□□□ -1.52
MSX1P28360 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
MSX1P28360 HSPA8P4-201ENST00000511877 1920 ntBASIC5.58□□□□□ -1.52
MSX1P28360 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 AC009951.1-201ENST00000623674 2614 ntBASIC5.58□□□□□ -1.52
MSX1P28360 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 AC022325.1-201ENST00000502748 2199 ntBASIC5.57□□□□□ -1.52
MSX1P28360 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX1P28360 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.57□□□□□ -1.52
MSX1P28360 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
MSX1P28360 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 RNU1-134P-201ENST00000362935 165 ntBASIC5.57□□□□□ -1.52
MSX1P28360 Y_RNA.297-201ENST00000364950 91 ntBASIC5.57□□□□□ -1.52
MSX1P28360 RNU6-1329P-201ENST00000365664 107 ntBASIC5.57□□□□□ -1.52
MSX1P28360 RNU6-701P-201ENST00000384059 107 ntBASIC5.57□□□□□ -1.52
MSX1P28360 Y_RNA.464-201ENST00000384282 110 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX1P28360 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX1P28360 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 GAPDHP27-201ENST00000447427 1020 ntBASIC5.57□□□□□ -1.52
MSX1P28360 NDUFB1P2-201ENST00000449477 176 ntBASIC5.57□□□□□ -1.52
MSX1P28360 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 AC007998.1-201ENST00000474156 672 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC092865.4-201ENST00000477936 615 ntBASIC5.57□□□□□ -1.52
MSX1P28360 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX1P28360 RPL30P11-201ENST00000495304 339 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC105384.2-201ENST00000508433 640 ntBASIC5.57□□□□□ -1.52
MSX1P28360 RNU6-27P-201ENST00000516146 107 ntBASIC5.57□□□□□ -1.52
MSX1P28360 CDH12P4-201ENST00000517835 295 ntBASIC5.57□□□□□ -1.52
MSX1P28360 CDH12P3-201ENST00000517935 295 ntBASIC5.57□□□□□ -1.52
MSX1P28360 CDH12P1-201ENST00000518435 295 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.57□□□□□ -1.52
MSX1P28360 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX1P28360 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.57□□□□□ -1.52
MSX1P28360 AC009643.1-201ENST00000532030 391 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC007956.1-201ENST00000555623 542 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC174048.1-201ENST00000603389 144 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC104763.2-201ENST00000604179 382 ntBASIC5.57□□□□□ -1.52
MSX1P28360 MIR6768-201ENST00000610734 72 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AL512652.1-201ENST00000619006 500 ntBASIC5.57□□□□□ -1.52
MSX1P28360 AC132825.6-201ENST00000638861 357 ntBASIC5.57□□□□□ -1.52
MSX1P28360 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
MSX1P28360 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 AC097063.1-201ENST00000426714 1797 ntBASIC5.57□□□□□ -1.52
MSX1P28360 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.57□□□□□ -1.52
MSX1P28360 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
MSX1P28360 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
MSX1P28360 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX1P28360 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX1P28360 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
MSX1P28360 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms