Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DDX18P3-201ENST00000404856 2007 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 CASC19-280ENST00000642102 1351 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC099654.2-201ENST00000433031 1980 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 SCN1A-220ENST00000641603 12506 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RNU6-263P-201ENST00000363811 107 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 Y_RNA.548-201ENST00000384656 105 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RNU4-78P-201ENST00000410940 126 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC138393.2-201ENST00000414742 246 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AL807761.1-201ENST00000417622 171 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC012498.1-201ENST00000424037 437 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 ZNF863P-201ENST00000426746 417 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 USP9YP9-201ENST00000429406 715 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 BNIP3P2-201ENST00000441221 577 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RPL21P89-201ENST00000444021 467 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC114755.5-201ENST00000447760 831 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RNU6-261P-201ENST00000459506 102 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RPS17P2-201ENST00000461663 408 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC069439.1-201ENST00000494739 167 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 TMEM248P1-201ENST00000510579 951 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RNU2-10P-201ENST00000516375 211 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AL133271.1-201ENST00000538229 291 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MIR3934-201ENST00000579806 107 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MIR4436B2-201ENST00000581415 91 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MIR4436B1-201ENST00000583272 91 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC060780.3-201ENST00000589464 80 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 IGHV3-29-201ENST00000604817 344 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AC019206.1-201ENST00000621938 425 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MIR3662-201ENST00000637030 95 ntBASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.89□□□□□ -1.63
TRIM39Q9HCM9 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 IRF5P1-201ENST00000504852 2164 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL672167.1-204ENST00000641875 3017 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC090229.1-201ENST00000590983 1609 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 RNU6-223P-201ENST00000362830 107 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 SNORA73.1-201ENST00000363107 205 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 SNORD56.2-201ENST00000363242 71 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 RNU6-637P-201ENST00000384050 107 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC013442.1-201ENST00000397347 228 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 OR1AA1P-201ENST00000419597 916 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 MRPS18BP2-201ENST00000434310 759 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL121871.1-201ENST00000443413 436 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC010655.1-201ENST00000449336 292 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 RPL36AP13-201ENST00000457490 317 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC073073.1-201ENST00000493920 463 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC117522.1-201ENST00000509821 380 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 BTF3P13-201ENST00000513224 490 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC025465.4-201ENST00000513422 638 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AP006245.2-201ENST00000522004 300 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC021006.3-201ENST00000530771 192 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL109766.1-201ENST00000555080 552 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms