Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 RNU6-921P-201ENST00000384361 107 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 U8.14-201ENST00000390843 143 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 SNORA40.3-201ENST00000390964 122 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 MIR320C1-201ENST00000408566 88 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 SNORA3C-201ENST00000408792 125 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 HMGN1P14-201ENST00000412459 517 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 LSM1P1-201ENST00000438629 273 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 NANOGNBP1-201ENST00000448444 480 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 snoU13.7-201ENST00000459220 104 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 SNORD42A-201ENST00000459584 64 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 RPS29P22-201ENST00000472363 168 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AP000893.1-201ENST00000474462 794 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 FAM172BP-201ENST00000487497 1089 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AF213884.1-201ENST00000488102 463 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC138853.1-201ENST00000503549 823 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC114981.1-201ENST00000503897 678 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC093824.1-201ENST00000508796 343 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 KCTD9P2-201ENST00000512203 1013 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AP004247.1-201ENST00000531556 1289 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC013828.2-201ENST00000532487 235 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 MIR4644-201ENST00000579929 84 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC112187.2-201ENST00000604345 283 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AL034351.1-201ENST00000605288 668 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC113194.1-201ENST00000606037 500 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC126118.1-201ENST00000607744 628 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC019193.2-201ENST00000610012 634 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC095031.1-201ENST00000623685 672 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AL603839.4-201ENST00000624658 1005 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 DCAF13P1-201ENST00000495256 1330 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 AC117529.2-201ENST00000512159 2068 ntBASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP4Q8N3C7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AP002907.1-201ENST00000606361 1430 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 RNU6-297P-201ENST00000384636 107 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 MIR649-201ENST00000384843 97 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC022028.1-201ENST00000412054 408 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC011933.1-201ENST00000413334 321 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 HMGB3P23-201ENST00000414981 585 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 RPL26P29-201ENST00000415623 438 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 EIF1P1-201ENST00000421436 341 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 MTND4LP11-201ENST00000422184 280 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AL356583.2-201ENST00000426536 280 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 SNRPEP7-201ENST00000438350 220 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 CBX1P1-201ENST00000440184 427 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 MTCO1P27-201ENST00000448269 226 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 IFNWP4-201ENST00000453148 294 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AL033528.1-201ENST00000453780 140 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC116533.1-201ENST00000459748 321 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC011276.1-201ENST00000469688 323 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 TMED11P-201ENST00000479478 690 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC041039.1-201ENST00000485656 536 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 LARP1BP2-201ENST00000486594 519 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 POU5F1P7-201ENST00000508759 541 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 MTCYBP41-201ENST00000528913 1123 ntBASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.82□□□□□ -1.8
CLIP4Q8N3C7 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms