Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA48.10-201ENST00000516965 160 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AC104072.1-201ENST00000568817 668 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 XIAPP1-201ENST00000603162 600 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AC124312.4-201ENST00000605533 310 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AL365400.2-201ENST00000605604 902 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 U3.45-201ENST00000607547 219 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AC253576.2-201ENST00000618815 580 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AF117829.1-206ENST00000621883 3802 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RNU6-1249P-201ENST00000363237 111 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RNA5SP50-201ENST00000363731 107 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RNU6-821P-201ENST00000390995 107 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RPS7P9-201ENST00000414704 586 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 HMGB3P23-201ENST00000414981 585 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC012498.1-201ENST00000424037 437 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RAC1P8-201ENST00000427086 527 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 Z99127.3-201ENST00000448158 395 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RPL7P38-201ENST00000488396 739 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 KCTD9P5-201ENST00000504141 1170 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC093767.1-201ENST00000504523 156 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC010265.1-201ENST00000513509 211 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC104027.1-201ENST00000521887 300 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 MTCO3P15-201ENST00000526563 574 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC087897.1-201ENST00000550134 156 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AL163153.1-201ENST00000554223 283 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC034105.4-201ENST00000568304 277 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 MIR5186-201ENST00000577504 120 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 MIR4474-201ENST00000579189 78 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 MIR4276-201ENST00000584832 70 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC006329.2-201ENST00000611491 394 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC008083.4-201ENST00000615076 444 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC126544.2-201ENST00000625174 749 ntBASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC40Q4G0X9 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 SNORA62.3-201ENST00000365110 153 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 SNORA51.6-201ENST00000384151 125 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 MTCO3P12-201ENST00000416718 547 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 MTCO3P1-205ENST00000422088 832 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 HMGN2P20-201ENST00000437531 273 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC009969.1-201ENST00000438726 172 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC115115.1-201ENST00000449927 248 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 PTGES3P5-201ENST00000455109 434 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 ARPC3P2-201ENST00000457786 533 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 snoU13.4-201ENST00000458916 104 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 PLGLA-201ENST00000465668 449 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 BOLA3P3-201ENST00000505182 232 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL592148.2-201ENST00000612210 372 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL390240.1-201ENST00000612950 384 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC040168.1-201ENST00000623594 991 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AP000720.1-201ENST00000625091 483 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC087821.2-201ENST00000637086 450 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AC002546.1-201ENST00000588041 2504 ntBASIC3.6□□□□□ -1.83
CCDC40Q4G0X9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 RPL7P26-201ENST00000333817 754 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 RNU6-492P-201ENST00000363035 104 ntBASIC3.59□□□□□ -1.83
CCDC40Q4G0X9 SNORD56.3-201ENST00000363507 71 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms