Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.12□□□□□ -1.91
PKNOX1P55347 AC103881.1-201ENST00000603476 538 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 AL162713.1-201ENST00000604480 262 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 AC124016.2-201ENST00000610058 665 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 AL355365.1-201ENST00000616480 294 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.12□□□□□ -1.91
PKNOX1P55347 AC002546.1-201ENST00000588041 2504 ntBASIC3.12□□□□□ -1.91
PKNOX1P55347 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PKNOX1P55347 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PKNOX1P55347 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 RNA5SP50-201ENST00000363731 107 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 RNU6-761P-201ENST00000384148 107 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 SNORA46-201ENST00000384762 135 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 MTND4LP20-201ENST00000402379 270 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AL133264.1-201ENST00000407157 562 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AL023807.1-201ENST00000407932 359 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 BOLA3P4-201ENST00000418151 400 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC092634.6-201ENST00000418558 192 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.11□□□□□ -1.91
PKNOX1P55347 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.11□□□□□ -1.91
PKNOX1P55347 AC012498.1-201ENST00000424037 437 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC006548.1-201ENST00000427470 102 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.11□□□□□ -1.91
PKNOX1P55347 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.11□□□□□ -1.91
PKNOX1P55347 HMGN2P20-201ENST00000437531 273 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 HMGB3P6-201ENST00000444896 598 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC004022.1-201ENST00000447766 1066 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PKNOX1P55347 UQCRHP3-201ENST00000451503 251 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 TRBV26-201ENST00000456572 344 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 MTCO3P2-201ENST00000457365 171 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 PABPC1P3-201ENST00000469174 459 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 RPS27AP1-201ENST00000475545 471 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.11□□□□□ -1.91
PKNOX1P55347 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.11□□□□□ -1.91
PKNOX1P55347 RNU6-1073P-201ENST00000517182 106 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 RNU1-45P-201ENST00000517191 141 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.11□□□□□ -1.91
PKNOX1P55347 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.11□□□□□ -1.91
PKNOX1P55347 AC087897.1-201ENST00000550134 156 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 SYF2P1-201ENST00000550658 413 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC104072.1-201ENST00000568817 668 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.11□□□□□ -1.91
PKNOX1P55347 AL355812.1-201ENST00000603215 216 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AP002802.2-201ENST00000605877 235 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 U3.45-201ENST00000607547 219 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AF117829.1-206ENST00000621883 3802 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 CR381572.1-201ENST00000625098 102 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AC126544.2-201ENST00000625174 749 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PKNOX1P55347 AC012442.3-202ENST00000636742 206 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.11□□□□□ -1.91
PKNOX1P55347 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
PKNOX1P55347 DBF4P1-201ENST00000412976 1892 ntBASIC3.11□□□□□ -1.91
PKNOX1P55347 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PKNOX1P55347 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
PKNOX1P55347 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.1□□□□□ -1.91
PKNOX1P55347 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.1□□□□□ -1.91
PKNOX1P55347 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 RNU6-236P-201ENST00000363886 106 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 RPL7P27-201ENST00000403775 720 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.1□□□□□ -1.91
PKNOX1P55347 BTF3P8-201ENST00000414577 526 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 RPS7P9-201ENST00000414704 586 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 KRR1P1-201ENST00000419430 803 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 RPS6P14-201ENST00000425165 719 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 C1DP1-201ENST00000426049 402 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 RAC1P8-201ENST00000427086 527 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 AC127537.2-201ENST00000439258 465 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 RPL23AP16-201ENST00000441715 421 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.1□□□□□ -1.91
PKNOX1P55347 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.1□□□□□ -1.91
PKNOX1P55347 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.1□□□□□ -1.91
PKNOX1P55347 AL024509.2-201ENST00000493462 493 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 DYNLL1P6-201ENST00000503440 264 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC021678.1-201ENST00000505195 936 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC118282.1-201ENST00000506408 765 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC092593.2-201ENST00000513866 913 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.1□□□□□ -1.91
PKNOX1P55347 ZNF705CP-201ENST00000530515 889 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AP001317.1-201ENST00000531194 960 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.1□□□□□ -1.91
PKNOX1P55347 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.1□□□□□ -1.91
PKNOX1P55347 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.1□□□□□ -1.91
PKNOX1P55347 BNIP3P5-201ENST00000562290 498 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 SULT1C2P1-202ENST00000562418 459 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 MIR2682-201ENST00000580305 110 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 MIR3922-201ENST00000585192 84 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AP003973.1-201ENST00000604639 691 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 DPRXP5-201ENST00000604662 539 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AL583856.2-201ENST00000606298 543 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC092354.2-201ENST00000607786 514 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 uc_338.25-201ENST00000613756 156 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms