Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC016180.1-201ENST00000567945 403 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 RPL23AP97-201ENST00000568955 471 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 MIR5186-201ENST00000577504 120 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 MIR4330-201ENST00000579077 105 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 ZNF415P1-201ENST00000582279 1166 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA1P49639 AL159169.3-201ENST00000608871 561 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 Z99129.1-201ENST00000612510 255 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXA1P49639 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA1P49639 AC087385.3-201ENST00000620477 187 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 CRYM-AS1-204ENST00000637983 556 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA1P49639 MAPK10-373ENST00000641983 6772 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA1P49639 AC125257.1-201ENST00000560400 2930 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA1P49639 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA1P49639 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
HOXA1P49639 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
HOXA1P49639 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA1P49639 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.54□□□□□ -1.84
HOXA1P49639 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HOXA1P49639 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 AC109780.1-201ENST00000451768 1344 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
HOXA1P49639 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
HOXA1P49639 RNU6-769P-201ENST00000384407 104 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 MIR298-201ENST00000401212 88 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 AF274854.1-201ENST00000413236 615 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 PSMA6P3-201ENST00000428242 164 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.53□□□□□ -1.84
HOXA1P49639 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 ATP5HP2-201ENST00000433885 485 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 AL592447.1-201ENST00000447592 540 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AP000542.1-201ENST00000448473 371 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 ARPC3P5-201ENST00000448802 534 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 PAXBP1P1-201ENST00000449315 447 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 SBDSP1-204ENST00000453858 737 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC110775.1-201ENST00000513721 462 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 OR5AP1P-201ENST00000529730 940 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA1P49639 AP002453.2-201ENST00000533503 320 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC091042.1-201ENST00000579213 173 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA1P49639 OR4G1P-201ENST00000588632 938 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 AC008782.1-201ENST00000603386 430 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AL390208.1-201ENST00000605885 644 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 AC008498.1-201ENST00000613012 531 ntBASIC3.53□□□□□ -1.84
HOXA1P49639 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.53□□□□□ -1.84
HOXA1P49639 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA1P49639 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.53□□□□□ -1.84
HOXA1P49639 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
HOXA1P49639 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.85
HOXA1P49639 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.85
HOXA1P49639 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC006378.2-201ENST00000623178 2476 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 MTND5P29-201ENST00000458676 1807 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HOXA1P49639 Y_RNA.548-201ENST00000384656 105 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AL049697.2-201ENST00000403708 294 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC092832.1-201ENST00000422934 400 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 RPL23AP1-201ENST00000428990 471 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AL590233.1-201ENST00000430017 456 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA1P49639 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 RPL23AP74-201ENST00000437246 471 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 MUPP-201ENST00000438111 566 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 HSPE1P28-201ENST00000443139 211 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 SSXP1-201ENST00000453640 473 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 RN7SL610P-201ENST00000463845 291 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC023424.2-201ENST00000493479 777 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms