Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC097468.3-201ENST00000607956 456 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 AL445264.1-201ENST00000621719 171 ntBASIC5.15□□□□□ -1.59
COL6A1P12109 FER-210ENST00000628534 558 ntTSL 5 BASIC5.15□□□□□ -1.59
COL6A1P12109 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL6A1P12109 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL6A1P12109 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A1P12109 AP001273.1-201ENST00000624493 3152 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A1P12109 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL6A1P12109 Y_RNA.1-201ENST00000352915 104 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 RNY4P34-201ENST00000364779 95 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 SDHCP2-201ENST00000398565 501 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC007738.1-201ENST00000413892 348 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 PIGFP2-201ENST00000421400 651 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 OR51AB1P-201ENST00000429046 620 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 RPS3AP54-201ENST00000435535 734 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC009961.2-201ENST00000435771 251 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 FDX1P2-201ENST00000450769 375 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 TRGVB-201ENST00000453257 471 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 Z82190.1-201ENST00000454534 490 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A1P12109 SCARNA10-201ENST00000459255 330 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 RPL21P71-201ENST00000465598 459 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 AC018710.1-201ENST00000506509 158 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 AC006499.2-201ENST00000513470 337 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 RN7SKP277-201ENST00000516895 283 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AP003467.2-201ENST00000520175 319 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 ARL2BPP5-201ENST00000523141 481 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 OR8L1P-201ENST00000534005 955 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.14□□□□□ -1.59
COL6A1P12109 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 AL512360.1-201ENST00000555346 234 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AL359212.1-201ENST00000556608 614 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A1P12109 AC067931.1-201ENST00000624190 671 ntBASIC5.14□□□□□ -1.59
COL6A1P12109 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A1P12109 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A1P12109 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A1P12109 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A1P12109 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 SPRR2C-201ENST00000290702 219 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL6A1P12109 Z98745.1-201ENST00000402553 494 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 BTBD10P2-201ENST00000404779 676 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AL356776.1-201ENST00000406574 447 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 RNU2-28P-201ENST00000410457 189 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 RPS20P15-201ENST00000412792 311 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 SPA17P1-201ENST00000416656 452 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC013429.2-201ENST00000418798 781 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 ZNF90P2-204ENST00000419323 1075 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 AC233981.1-201ENST00000423224 461 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 AL513185.2-201ENST00000425543 193 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL6A1P12109 AC011998.1-201ENST00000433403 117 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC002486.1-201ENST00000435098 391 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.13□□□□□ -1.59
COL6A1P12109 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.13□□□□□ -1.59
COL6A1P12109 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 BX276092.4-201ENST00000452056 248 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 RPL37P6-202ENST00000464216 403 ntBASIC5.13□□□□□ -1.59
COL6A1P12109 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.13□□□□□ -1.59
COL6A1P12109 HMGN1P12-201ENST00000499125 195 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms