Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD4P09016 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
HOXD4P09016 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD4P09016 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD4P09016 RNU6-1151P-201ENST00000384684 107 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC007066.1-201ENST00000392902 381 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 RNU6-757P-201ENST00000410334 100 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC006960.1-201ENST00000419980 153 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 RPL21P109-201ENST00000422213 475 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AL139421.1-201ENST00000423010 169 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD4P09016 USP9YP11-201ENST00000427537 717 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 UBE2V1P1-201ENST00000430836 445 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD4P09016 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD4P09016 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 ATP5F1P1-201ENST00000433775 569 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC092393.1-201ENST00000439625 742 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 RPS3AP46-201ENST00000448352 682 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD4P09016 AL133217.1-201ENST00000450980 425 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXD4P09016 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC004069.2-201ENST00000505438 1114 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC026427.2-201ENST00000506228 536 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC104090.1-201ENST00000506341 1171 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC021146.8-201ENST00000507455 733 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC104619.4-201ENST00000510773 249 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 ARL2BPP6-201ENST00000512757 439 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC118465.1-201ENST00000513820 1271 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 SCARNA13-201ENST00000516672 275 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 RN7SKP277-201ENST00000516895 283 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 RNA5SP135-201ENST00000517019 125 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC022695.1-201ENST00000522089 237 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD4P09016 OR8L1P-201ENST00000534005 955 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD4P09016 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXD4P09016 MIR3200-201ENST00000580767 85 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXD4P09016 AC006065.5-201ENST00000623427 349 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXD4P09016 MIR4278-201ENST00000636094 69 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 AP000776.1-201ENST00000530032 1663 ntBASIC3.38□□□□□ -1.87
HOXD4P09016 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD4P09016 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXD4P09016 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 RNU6-582P-201ENST00000362989 107 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 SNORD3H-201ENST00000384486 214 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 SNORD116-23-201ENST00000384645 92 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AL356131.1-201ENST00000405826 414 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AL139098.1-201ENST00000407291 389 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD4P09016 RPS7P15-201ENST00000415804 584 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC011233.1-201ENST00000422812 283 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 AP000907.1-201ENST00000428428 510 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 TXNL1P1-201ENST00000429528 554 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 Z74696.2-201ENST00000436514 498 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD4P09016 MTND3P1-201ENST00000441336 220 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 BX276092.4-201ENST00000452056 248 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 RPL12P26-201ENST00000452430 487 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.37□□□□□ -1.87
HOXD4P09016 AL122001.1-201ENST00000457027 370 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 RPL5P24-201ENST00000463742 885 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 WBP1LP4-201ENST00000505043 344 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC010486.3-201ENST00000511602 785 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 RNU6-1225P-201ENST00000516336 65 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 Vault.1-201ENST00000516474 102 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 RN7SKP60-201ENST00000516985 239 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 AC005832.3-201ENST00000537929 631 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AL121766.1-201ENST00000547436 487 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 HIGD1AP17-201ENST00000554576 276 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms