Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 RLIMP1-201ENST00000339626 1680 ntBASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC8.04□□□□□ -1.12
CCDC61Q9Y6R9 AC008957.3-201ENST00000624112 2242 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 THAP12P9-201ENST00000503971 2360 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 TMEM75-201ENST00000624314 2165 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 SNORA58B-201ENST00000364259 136 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 Y_RNA.580-201ENST00000391004 95 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 RNU6-918P-201ENST00000391219 106 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 FABP5P13-201ENST00000452144 328 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 RPS4XP20-201ENST00000505751 772 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AC074250.1-201ENST00000511117 192 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 SNORD116-28-201ENST00000516123 91 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 CDH12P4-201ENST00000517835 295 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 CDH12P3-201ENST00000517935 295 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 CDH12P1-201ENST00000518435 295 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 MIR1269B-201ENST00000580405 75 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AC067852.5-201ENST00000589299 310 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 AL162424.1-201ENST00000602325 221 ntBASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CCDC61Q9Y6R9 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.12
CCDC61Q9Y6R9 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AL159987.1-201ENST00000347911 293 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 Y_RNA.143-201ENST00000363520 106 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 RNA5SP131-201ENST00000365452 119 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 CRP-202ENST00000368110 667 ntTSL 3 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 Y_RNA.441-201ENST00000384123 112 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 RNU6-171P-201ENST00000384354 107 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 EI24P1-201ENST00000416584 867 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC113412.1-201ENST00000425840 504 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 VTI1BP4-201ENST00000427516 527 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC023141.8-201ENST00000442554 208 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 ISCUP1-201ENST00000454451 448 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AP001324.2-201ENST00000461163 319 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 RPL32P33-201ENST00000487023 394 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC007016.1-201ENST00000512110 244 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC005798.1-201ENST00000513715 387 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC139365.2-201ENST00000517972 253 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 SYF2P1-201ENST00000550658 413 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC010168.2-201ENST00000562691 5428 ntBASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC8.02□□□□□ -1.13
CCDC61Q9Y6R9 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 PRO1804-201ENST00000623780 2050 ntBASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC8.01□□□□□ -1.13
CCDC61Q9Y6R9 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms