Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC012182.1-201ENST00000570133 895 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR4444-1-201ENST00000581696 74 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR3670-2-201ENST00000582974 65 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR4635-201ENST00000583759 79 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR3670-1-201ENST00000584160 65 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR4444-2-201ENST00000584390 74 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR3670-3-201ENST00000584855 65 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 AC091057.2-201ENST00000602594 792 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 DUXAP4-201ENST00000603046 613 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 AC096947.1-201ENST00000603233 470 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 MIR3670-4-201ENST00000612260 65 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.88□□□□□ -1.95
CCDC42Q96M95 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC42Q96M95 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CCDC42Q96M95 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 RNU6-50P-201ENST00000362356 103 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 RNA5SP210-201ENST00000391034 120 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 AL591034.1-201ENST00000407447 340 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 RNU4-65P-201ENST00000410473 140 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 RPL35AP12-201ENST00000425362 338 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 MORF4L1P4-201ENST00000450245 976 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AP001992.1-205ENST00000462248 379 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC010374.2-201ENST00000512933 535 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC016550.3-201ENST00000515706 767 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC090695.1-201ENST00000561269 1222 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 SNORD84-203ENST00000584275 78 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC012493.2-201ENST00000595083 291 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 BDH2P1-201ENST00000602288 736 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC125494.3-201ENST00000602759 455 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AL356575.1-201ENST00000603008 283 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC068831.7-201ENST00000616954 363 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 MIR6075-201ENST00000620782 95 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 AC006963.1-201ENST00000624003 1052 ntBASIC2.87□□□□□ -1.95
CCDC42Q96M95 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.87□□□□□ -1.95
CCDC42Q96M95 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AP002907.1-201ENST00000606361 1430 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 ZNF807-201ENST00000328088 1707 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC42Q96M95 MIR670-201ENST00000390142 98 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 RPS3AP26-201ENST00000398259 784 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AL138827.1-201ENST00000402666 306 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 RNU6ATAC34P-201ENST00000408879 121 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AL671855.1-201ENST00000446875 1203 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AL035407.2-201ENST00000454090 378 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 HMGB1P25-201ENST00000468402 607 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC104687.1-201ENST00000485829 412 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 RPL21P131-201ENST00000497298 483 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC007954.1-201ENST00000554198 494 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC079880.2-201ENST00000603790 1213 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC079228.1-201ENST00000624774 1049 ntBASIC2.86□□□□□ -1.95
CCDC42Q96M95 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC42Q96M95 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC42Q96M95 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC42Q96M95 RNU1-100P-201ENST00000365255 165 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AL121972.1-201ENST00000402023 252 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 RNU6-1077P-201ENST00000410506 102 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC233728.2-201ENST00000425348 757 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 HMGB1P15-201ENST00000453854 435 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC087879.1-201ENST00000474343 374 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 RNA5SP341-201ENST00000516261 117 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC100870.1-201ENST00000522035 505 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC010306.1-201ENST00000523223 1117 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC123904.3-201ENST00000547218 814 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 BNIP3P7-201ENST00000605641 516 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 VIS1.1-201ENST00000610517 203 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AL110115.1-201ENST00000614396 364 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 AP000676.4-201ENST00000624659 623 ntBASIC2.85□□□□□ -1.95
CCDC42Q96M95 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC42Q96M95 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC42Q96M95 AL136520.1-201ENST00000600311 1322 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms