Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VMP1Q96GC9 UBE3AP2-201ENST00000429033 2259 ntBASIC3.72□□□□□ -1.81
VMP1Q96GC9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.72□□□□□ -1.81
VMP1Q96GC9 CR381670.1-201ENST00000624291 1693 ntBASIC3.71□□□□□ -1.81
VMP1Q96GC9 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 MIR493-201ENST00000385254 89 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 USP9YP36-201ENST00000424581 829 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 VN1R25P-201ENST00000443385 738 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 AL353691.1-201ENST00000451332 387 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 VN1R40P-201ENST00000455196 941 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AL672167.3-201ENST00000465951 960 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 FTH1P2-201ENST00000466086 412 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 RPL7P5-201ENST00000471472 736 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 RN7SL132P-201ENST00000478131 296 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC114981.1-201ENST00000503897 678 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 VN1R104P-201ENST00000505115 1009 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC004069.2-201ENST00000505438 1114 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 SNORA31.1-201ENST00000515993 133 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 SNORA19.3-201ENST00000516165 130 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 SNORA31.5-201ENST00000516190 133 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 FAM60DP-201ENST00000524174 632 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 SLC2A13P1-201ENST00000531560 322 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC055876.1-202ENST00000567053 138 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC022968.1-201ENST00000567372 442 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC013444.2-201ENST00000603317 787 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 DUXAP11-201ENST00000603858 526 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC069304.2-201ENST00000605154 435 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AL365503.1-201ENST00000605247 905 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.71□□□□□ -1.82
VMP1Q96GC9 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VMP1Q96GC9 SRP72P2-201ENST00000344851 1979 ntBASIC3.71□□□□□ -1.82
VMP1Q96GC9 AC109315.1-201ENST00000584143 1347 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 RNU6-1122P-201ENST00000384449 107 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 MIR135A2-201ENST00000384854 100 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 RPL7AP73-201ENST00000413490 353 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 HSPE1P1-201ENST00000421494 318 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 RPL7P46-201ENST00000425129 740 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 RPL7P2-201ENST00000427639 268 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 KCTD9P3-201ENST00000434597 1169 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 SKP1P1-201ENST00000438081 489 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC140076.1-201ENST00000449897 361 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 AP002884.2-201ENST00000471647 395 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 PHBP14-201ENST00000512887 367 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 RNA5SP179-201ENST00000517284 121 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC015688.2-201ENST00000584523 262 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC097504.2-201ENST00000608088 454 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 AC104763.3-201ENST00000613765 618 ntBASIC3.7□□□□□ -1.82
VMP1Q96GC9 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.7□□□□□ -1.82
VMP1Q96GC9 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VMP1Q96GC9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VMP1Q96GC9 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.69□□□□□ -1.82
VMP1Q96GC9 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 Y_RNA.126-201ENST00000363382 111 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 RNA5SP97-201ENST00000365006 84 ntBASIC3.69□□□□□ -1.82
VMP1Q96GC9 RNU1-64P-201ENST00000365443 163 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms