Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 AC002543.1-201ENST00000299783 1954 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 BX005019.1-201ENST00000561881 1810 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 SNORA40.18-201ENST00000391200 128 ntBASIC2.28□□□□□ -2.04
CHD9Q3L8U1 RN7SKP247-201ENST00000411094 308 ntBASIC2.28□□□□□ -2.04
CHD9Q3L8U1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 MIR6766-201ENST00000622641 72 ntBASIC2.28□□□□□ -2.04
CHD9Q3L8U1 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC2.28□□□□□ -2.04
CHD9Q3L8U1 AC027514.1-201ENST00000588561 1603 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.28□□□□□ -2.05
CHD9Q3L8U1 RNA5SP129-201ENST00000410276 118 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 OR6C64P-201ENST00000419708 825 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 snoU13.18-201ENST00000459483 104 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 AC005840.1-201ENST00000498412 377 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 WDR61-205ENST00000558459 884 ntTSL 3 BASIC2.28□□□□□ -2.05
CHD9Q3L8U1 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.28□□□□□ -2.05
CHD9Q3L8U1 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.28□□□□□ -2.05
CHD9Q3L8U1 AC245517.5-201ENST00000611529 162 ntBASIC2.28□□□□□ -2.05
CHD9Q3L8U1 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.05
CHD9Q3L8U1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC008264.2-201ENST00000610193 3731 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 OR5H15-201ENST00000383696 930 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AP000942.1-201ENST00000463969 747 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC072039.1-201ENST00000477611 581 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC090281.1-201ENST00000523019 276 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AP001207.1-201ENST00000524051 481 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AP003385.6-201ENST00000531603 374 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 MIR518E-201ENST00000385252 88 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AL354719.1-201ENST00000406535 843 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 MTCO1P42-201ENST00000457379 726 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 OR4R2P-201ENST00000530815 597 ntBASIC2.27□□□□□ -2.05
CHD9Q3L8U1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.27□□□□□ -2.05
CHD9Q3L8U1 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AC011492.1-201ENST00000600023 315 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AP004372.1-201ENST00000604842 844 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 BX664608.1-201ENST00000610519 487 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AC063952.1-203ENST00000634410 658 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 OR4K11P-201ENST00000431829 904 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AC107871.2-201ENST00000612894 502 ntBASIC2.26□□□□□ -2.05
CHD9Q3L8U1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC2.26□□□□□ -2.05
CHD9Q3L8U1 AL356806.1-201ENST00000422524 916 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AL450263.2-201ENST00000439400 589 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 CU459211.1-201ENST00000635667 749 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AL445437.1-201ENST00000623157 3087 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AC116158.1-201ENST00000560231 2129 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AL139276.1-201ENST00000311910 1001 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 CACYBPP1-201ENST00000438592 684 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AC002553.2-201ENST00000453217 340 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 TRMT112P2-201ENST00000512910 132 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 RPS3AP4-201ENST00000555161 764 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 AC055876.1-202ENST00000567053 138 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 MIR4255-201ENST00000579351 72 ntBASIC2.25□□□□□ -2.05
CHD9Q3L8U1 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CHD9Q3L8U1 RNU4-62P-201ENST00000410125 130 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AP003467.2-201ENST00000520175 319 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 MIR1276-201ENST00000408707 83 ntBASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.24□□□□□ -2.05
CHD9Q3L8U1 AC110588.1-201ENST00000559699 137 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms