Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 RPL26P30-202ENST00000602923 645 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC105254.2-201ENST00000603636 436 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AP000942.4-201ENST00000604811 241 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AL391813.2-201ENST00000609113 322 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AL022401.1-201ENST00000619498 108 ntBASIC4.61□□□□□ -1.67
MSX2P35548 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.61□□□□□ -1.67
MSX2P35548 AC091953.2-201ENST00000623979 160 ntBASIC4.61□□□□□ -1.67
MSX2P35548 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX2P35548 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.61□□□□□ -1.67
MSX2P35548 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
MSX2P35548 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSX2P35548 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX2P35548 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
MSX2P35548 XPOTP1-201ENST00000443317 2398 ntBASIC4.61□□□□□ -1.67
MSX2P35548 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
MSX2P35548 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
MSX2P35548 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
MSX2P35548 AL031679.1-201ENST00000400616 525 ntBASIC4.6□□□□□ -1.67
MSX2P35548 MIR1178-201ENST00000408396 91 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 AL353678.1-201ENST00000422735 741 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC093655.2-201ENST00000425735 631 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX2P35548 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 NIPA2P5-201ENST00000452282 464 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC005008.1-201ENST00000456151 612 ntBASIC4.6□□□□□ -1.67
MSX2P35548 RPS26P39-201ENST00000469206 341 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC096576.1-201ENST00000489014 359 ntBASIC4.6□□□□□ -1.67
MSX2P35548 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 AP001025.2-201ENST00000490908 477 ntBASIC4.6□□□□□ -1.67
MSX2P35548 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 AC010587.1-201ENST00000505809 469 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC002456.2-201ENST00000509356 380 ntBASIC4.6□□□□□ -1.67
MSX2P35548 ATP5LP3-201ENST00000514223 304 ntBASIC4.6□□□□□ -1.67
MSX2P35548 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 RNA5SP401-201ENST00000515920 127 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC022690.1-201ENST00000526681 550 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX2P35548 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX2P35548 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX2P35548 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX2P35548 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AC115621.1-201ENST00000604653 858 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AL360085.1-201ENST00000604713 532 ntBASIC4.6□□□□□ -1.67
MSX2P35548 HSPE1P14-201ENST00000605812 302 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 AC233309.1-201ENST00000619522 751 ntBASIC4.6□□□□□ -1.67
MSX2P35548 MIR1302-1-201ENST00000637932 143 ntBASIC4.6□□□□□ -1.67
MSX2P35548 AC100810.6-201ENST00000638068 285 ntBASIC4.6□□□□□ -1.67
MSX2P35548 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX2P35548 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX2P35548 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX2P35548 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
MSX2P35548 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
MSX2P35548 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSX2P35548 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
MSX2P35548 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.59□□□□□ -1.67
MSX2P35548 Y_RNA.67-201ENST00000362870 100 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU6-169P-201ENST00000365336 107 ntBASIC4.59□□□□□ -1.67
MSX2P35548 SNORA20.2-201ENST00000383922 131 ntBASIC4.59□□□□□ -1.67
MSX2P35548 SNORA51.6-201ENST00000384151 125 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU6-74P-201ENST00000384235 107 ntBASIC4.59□□□□□ -1.67
MSX2P35548 SNORA67-201ENST00000384423 137 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RNU6-441P-201ENST00000384545 106 ntBASIC4.59□□□□□ -1.67
MSX2P35548 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
MSX2P35548 AL391361.1-201ENST00000405580 489 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RN7SKP32-201ENST00000410167 303 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RN7SKP293-201ENST00000411389 296 ntBASIC4.59□□□□□ -1.67
MSX2P35548 RPL35AP24-201ENST00000413846 330 ntBASIC4.59□□□□□ -1.67
MSX2P35548 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 150.1 ms