Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL450489.1-201ENST00000612071 468 ntBASIC2.56□□□□□ -2
COL5A1P20908 AP000943.4-201ENST00000622912 357 ntBASIC2.56□□□□□ -2
COL5A1P20908 LINC00216-201ENST00000623548 1126 ntBASIC2.56□□□□□ -2
COL5A1P20908 CR381653.2-201ENST00000624041 768 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC092608.2-201ENST00000624427 218 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC009039.2-201ENST00000624524 529 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL5A1P20908 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.56□□□□□ -2
COL5A1P20908 AP006437.1-201ENST00000641440 3685 ntBASIC2.56□□□□□ -2
COL5A1P20908 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 XIAPP3-201ENST00000312918 795 ntBASIC2.56□□□□□ -2
COL5A1P20908 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL5A1P20908 SNORD62.1-201ENST00000362541 86 ntBASIC2.56□□□□□ -2
COL5A1P20908 Y_RNA.118-201ENST00000363300 101 ntBASIC2.56□□□□□ -2
COL5A1P20908 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL5A1P20908 RNU6-152P-201ENST00000384037 107 ntBASIC2.56□□□□□ -2
COL5A1P20908 RNA5SP239-201ENST00000410218 129 ntBASIC2.56□□□□□ -2
COL5A1P20908 AL451074.5-201ENST00000415894 435 ntBASIC2.56□□□□□ -2
COL5A1P20908 MTND4LP7-201ENST00000431728 294 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC112220.1-201ENST00000434628 355 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC009969.1-201ENST00000438726 172 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC2.56□□□□□ -2
COL5A1P20908 AC016687.1-201ENST00000482574 353 ntBASIC2.56□□□□□ -2
COL5A1P20908 RN7SL297P-201ENST00000483161 293 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC021087.2-201ENST00000504656 1203 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.56□□□□□ -2
COL5A1P20908 RNU6-943P-201ENST00000516960 98 ntBASIC2.56□□□□□ -2
COL5A1P20908 RNU6-548P-201ENST00000517083 115 ntBASIC2.56□□□□□ -2
COL5A1P20908 NPM1P52-201ENST00000518264 846 ntBASIC2.56□□□□□ -2
COL5A1P20908 UBTFL10-201ENST00000528532 562 ntBASIC2.56□□□□□ -2
COL5A1P20908 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.56□□□□□ -2
COL5A1P20908 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 ZNF861P-201ENST00000588126 639 ntBASIC2.56□□□□□ -2
COL5A1P20908 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.56□□□□□ -2
COL5A1P20908 AC005046.1-201ENST00000608515 625 ntBASIC2.56□□□□□ -2
COL5A1P20908 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.56□□□□□ -2
COL5A1P20908 AC010338.1-201ENST00000621823 717 ntBASIC2.56□□□□□ -2
COL5A1P20908 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL5A1P20908 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.55□□□□□ -2
COL5A1P20908 AC009487.4-201ENST00000624969 3585 ntBASIC2.55□□□□□ -2
COL5A1P20908 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL5A1P20908 RNU6-328P-201ENST00000390887 106 ntBASIC2.55□□□□□ -2
COL5A1P20908 RPS3AP26-201ENST00000398259 784 ntBASIC2.55□□□□□ -2
COL5A1P20908 BTF3P7-201ENST00000407097 488 ntBASIC2.55□□□□□ -2
COL5A1P20908 VTA1P1-201ENST00000414044 866 ntBASIC2.55□□□□□ -2
COL5A1P20908 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL5A1P20908 YPEL5P1-201ENST00000419731 367 ntBASIC2.55□□□□□ -2
COL5A1P20908 AL356320.1-201ENST00000429616 163 ntBASIC2.55□□□□□ -2
COL5A1P20908 RPL23AP15-201ENST00000450202 459 ntBASIC2.55□□□□□ -2
COL5A1P20908 MTND2P30-201ENST00000456663 382 ntBASIC2.55□□□□□ -2
COL5A1P20908 RN7SL330P-201ENST00000469709 307 ntBASIC2.55□□□□□ -2
COL5A1P20908 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.55□□□□□ -2
COL5A1P20908 POU5F1P7-201ENST00000508759 541 ntBASIC2.55□□□□□ -2
COL5A1P20908 AC112206.4-201ENST00000515142 405 ntBASIC2.55□□□□□ -2
COL5A1P20908 RNU6-889P-201ENST00000517189 103 ntBASIC2.55□□□□□ -2
COL5A1P20908 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.55□□□□□ -2
COL5A1P20908 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.55□□□□□ -2
COL5A1P20908 AP003102.1-201ENST00000525638 661 ntBASIC2.55□□□□□ -2
COL5A1P20908 HIGD1AP10-201ENST00000527837 282 ntBASIC2.55□□□□□ -2
COL5A1P20908 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.55□□□□□ -2
COL5A1P20908 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.55□□□□□ -2
COL5A1P20908 MIR4648-201ENST00000580107 72 ntBASIC2.55□□□□□ -2
COL5A1P20908 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.55□□□□□ -2
COL5A1P20908 AC008277.2-201ENST00000605196 797 ntBASIC2.55□□□□□ -2
COL5A1P20908 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.55□□□□□ -2
COL5A1P20908 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.55□□□□□ -2
COL5A1P20908 AL512643.1-201ENST00000635735 524 ntBASIC2.55□□□□□ -2
COL5A1P20908 AC106858.1-201ENST00000637497 429 ntBASIC2.55□□□□□ -2
COL5A1P20908 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL5A1P20908 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.55□□□□□ -2
COL5A1P20908 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
COL5A1P20908 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
COL5A1P20908 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
COL5A1P20908 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A1P20908 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
COL5A1P20908 RNU6-618P-201ENST00000363518 112 ntBASIC2.54□□□□□ -2
COL5A1P20908 MIR181B1-201ENST00000385240 110 ntBASIC2.54□□□□□ -2
COL5A1P20908 NCSTNP1-201ENST00000406229 144 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.54□□□□□ -2
COL5A1P20908 AC013268.2-201ENST00000420753 337 ntBASIC2.54□□□□□ -2
COL5A1P20908 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.54□□□□□ -2
COL5A1P20908 RPL21P18-201ENST00000469899 480 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC015908.1-201ENST00000478739 476 ntBASIC2.54□□□□□ -2
COL5A1P20908 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC2.54□□□□□ -2
COL5A1P20908 AC104629.1-201ENST00000494226 508 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC008716.1-201ENST00000511084 513 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.54□□□□□ -2
COL5A1P20908 HPRT1P3-201ENST00000539521 576 ntBASIC2.54□□□□□ -2
COL5A1P20908 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC2.54□□□□□ -2
COL5A1P20908 AC007621.1-201ENST00000604544 437 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC105148.1-201ENST00000604961 409 ntBASIC2.54□□□□□ -2
COL5A1P20908 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC006249.1-201ENST00000621223 471 ntBASIC2.54□□□□□ -2
COL5A1P20908 LRRC77P-213ENST00000637727 880 ntBASIC2.54□□□□□ -2
COL5A1P20908 AC016717.2-201ENST00000609089 5141 ntBASIC2.54□□□□□ -2
COL5A1P20908 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.54□□□□□ -2
COL5A1P20908 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms