Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC009302.1-201ENST00000417147 390 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 FHP1-201ENST00000442741 703 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 PPIAP20-201ENST00000449839 135 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 BTF3P5-201ENST00000457252 467 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 COPS8P2-201ENST00000473228 627 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC072052.1-201ENST00000496556 306 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 SNORA40.12-201ENST00000516329 111 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 SNORD60.2-201ENST00000516883 86 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 RNU6-1314P-201ENST00000517139 104 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC009117.1-201ENST00000563948 554 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 BX323046.1-201ENST00000610145 535 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC022467.1-201ENST00000614738 749 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC231657.1-201ENST00000624313 397 ntBASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC39Q9UFE4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 LINC00561-201ENST00000565815 2738 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 CCT8P1-201ENST00000413611 1657 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 ELL2P4-201ENST00000446870 1376 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RPL7P26-201ENST00000333817 754 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RNU1-94P-201ENST00000362627 173 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 SNORD96B-201ENST00000386148 79 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RNU6-1158P-201ENST00000391167 107 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RNA5SP146-201ENST00000410743 123 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 NIPA2P1-201ENST00000426223 976 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RPEP2-201ENST00000432149 701 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 TXNP5-201ENST00000441043 315 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 MRPL48P1-201ENST00000445390 636 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL354714.3-201ENST00000447284 493 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 CACYBPP2-201ENST00000453625 678 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC005008.1-201ENST00000456151 612 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC097484.1-201ENST00000471148 389 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RPL7AP10-201ENST00000481016 791 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 SNRPCP2-201ENST00000504370 475 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC010587.1-201ENST00000505809 469 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 HMGB3P15-201ENST00000507326 574 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC011411.1-201ENST00000509592 876 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PCBP2P3-201ENST00000509726 843 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RNU6-583P-201ENST00000516012 92 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 RNU6-885P-201ENST00000516607 104 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC022634.1-201ENST00000520765 532 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AP005902.1-201ENST00000521358 186 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 NMNAT1P1-201ENST00000554095 876 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC026464.5-201ENST00000562497 722 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AP001180.3-201ENST00000582221 145 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 MIR548Y-201ENST00000582739 110 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL133338.2-201ENST00000604292 736 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AP001330.4-201ENST00000604350 154 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC115621.1-201ENST00000604653 858 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC008966.2-201ENST00000606157 453 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC234782.5-201ENST00000617723 324 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PABPC1P6-201ENST00000445594 1829 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC027228.2-201ENST00000567141 2154 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 AC092447.10-201ENST00000620607 1652 ntBASIC5.69□□□□□ -1.5
CCDC39Q9UFE4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC39Q9UFE4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms