Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 USP9YP34-201ENST00000453983 808 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 RPS29P11-201ENST00000496507 171 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 IGLVIV-53-201ENST00000520107 367 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 MIR583-201ENST00000384846 75 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 RPL23AP74-201ENST00000437246 471 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC107398.1-201ENST00000486904 505 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 RN7SKP234-201ENST00000517173 224 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 FRG1BP-201ENST00000278882 761 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 LUZP4P1-201ENST00000415420 344 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS13AQ96RL7 AC021269.2-201ENST00000532318 330 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 RN7SL622P-201ENST00000585292 275 ntBASIC2.24□□□□□ -2.05
VPS13AQ96RL7 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 HMGB3P8-201ENST00000449709 577 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 AC103968.1-201ENST00000557841 573 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 GTF2H2B-203ENST00000508065 1432 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 SAGE4P-201ENST00000442271 3381 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 COX6CP2-201ENST00000444980 225 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 MOB1AP2-201ENST00000446060 614 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
VPS13AQ96RL7 AC107027.3-201ENST00000565095 3473 ntBASIC2.23□□□□□ -2.05
VPS13AQ96RL7 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 MIR221-201ENST00000385135 110 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AL512633.1-201ENST00000399931 655 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 FAT1P1-201ENST00000406588 507 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 POLR2J4-204ENST00000418424 324 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 RPL7P54-201ENST00000438336 674 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AL590399.6-201ENST00000446396 307 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 RNA5SP380-201ENST00000517190 98 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AP004372.1-201ENST00000604842 844 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 Z99496.1-201ENST00000469424 1477 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 RAD1P1-201ENST00000231383 813 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 RNU1-100P-201ENST00000365255 165 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 HMGB3P23-201ENST00000414981 585 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC013410.1-201ENST00000436223 1232 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 CR769767.1-201ENST00000436337 346 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 DNAJC19P4-201ENST00000440115 345 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 VWA8P1-201ENST00000510889 176 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC026412.2-201ENST00000512270 1075 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 MTCYBP20-201ENST00000524239 1129 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AP000857.1-201ENST00000532151 543 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC010378.1-201ENST00000619270 362 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AL109809.4-201ENST00000603520 2185 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 SNORA40.18-201ENST00000391200 128 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC080125.1-201ENST00000414888 684 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 TVP23BP2-201ENST00000455082 615 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC103975.1-201ENST00000482506 483 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 AC106730.3-201ENST00000624568 641 ntBASIC2.22□□□□□ -2.05
VPS13AQ96RL7 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
VPS13AQ96RL7 RNU1-91P-201ENST00000364746 163 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 AL158825.1-201ENST00000414735 521 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 AC100870.1-201ENST00000522035 505 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 SNORA41-201ENST00000384675 132 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 DYNLL1P6-201ENST00000503440 264 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 AC021146.5-201ENST00000503544 545 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 SUB1P3-201ENST00000564581 315 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 AL450489.1-201ENST00000612071 468 ntBASIC2.21□□□□□ -2.06
VPS13AQ96RL7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS13AQ96RL7 RNY1P10-201ENST00000363268 113 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC068781.1-201ENST00000488231 618 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 ASNSP4-201ENST00000511103 447 ntBASIC2.2□□□□□ -2.06
VPS13AQ96RL7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms