Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RNU6-50P-201ENST00000362356 103 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RNU6-236P-201ENST00000363886 106 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RNU6-657P-201ENST00000383904 107 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 SNORD17-201ENST00000390930 237 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 U3.29-201ENST00000391296 212 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RPL23AP47-201ENST00000408017 460 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 HSFY4P-201ENST00000415994 1181 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RPF2P1-201ENST00000424137 906 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 RBMY2UP-201ENST00000453474 324 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC034236.1-201ENST00000469891 373 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 BOLA3P3-201ENST00000505182 232 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC008837.1-201ENST00000511513 412 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC011602.1-201ENST00000546484 331 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 MTCYBP27-201ENST00000555160 670 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC011492.1-201ENST00000600023 315 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC068620.3-201ENST00000602749 560 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC024220.1-201ENST00000603675 484 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AL445435.1-201ENST00000604232 665 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AL592148.2-201ENST00000612210 372 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC022149.2-201ENST00000621061 203 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 AC006249.1-201ENST00000621223 471 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 MTND4P34-201ENST00000572715 1371 ntBASIC3.83□□□□□ -1.8
CCDC43Q96MW1 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC43Q96MW1 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL136520.1-201ENST00000600311 1322 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AP002088.1-201ENST00000382740 395 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 RNU6-1300P-201ENST00000391046 108 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 ARF4P3-201ENST00000397387 509 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 RSL24D1P1-201ENST00000404972 493 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC092447.6-201ENST00000414578 210 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL159169.1-201ENST00000421119 127 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC012497.1-201ENST00000429392 575 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 RABEPKP1-201ENST00000440529 1026 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 PRDX3P3-201ENST00000447765 522 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 HMGB1P25-201ENST00000468402 607 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC107934.2-201ENST00000518653 310 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 HIGD1AP10-201ENST00000527837 282 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC007458.1-201ENST00000542812 373 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC087897.1-201ENST00000550134 156 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL389895.1-201ENST00000554127 252 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AC012669.1-201ENST00000603209 283 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AP002802.2-201ENST00000605877 235 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL159169.3-201ENST00000608871 561 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 U6.105-201ENST00000637379 88 ntBASIC3.82□□□□□ -1.8
CCDC43Q96MW1 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CCDC43Q96MW1 AL513302.2-201ENST00000562313 1842 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC43Q96MW1 GDI2P1-201ENST00000429312 1336 ntBASIC3.81□□□□□ -1.8
CCDC43Q96MW1 SNORA63.1-201ENST00000362493 131 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms