Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.77□□□□□ -1.81
MSH6P52701 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.77□□□□□ -1.81
MSH6P52701 AL442163.2-201ENST00000553912 710 ntBASIC3.77□□□□□ -1.81
MSH6P52701 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 uc_338.9-201ENST00000617424 182 ntBASIC3.77□□□□□ -1.81
MSH6P52701 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 ZNF72P-201ENST00000425869 1908 ntBASIC3.76□□□□□ -1.81
MSH6P52701 RPS3AP26-201ENST00000398259 784 ntBASIC3.76□□□□□ -1.81
MSH6P52701 Z86062.1-201ENST00000406773 777 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 AC092013.1-201ENST00000438795 332 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
MSH6P52701 RNU7-27P-201ENST00000459281 62 ntBASIC3.76□□□□□ -1.81
MSH6P52701 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 AP000926.1-201ENST00000479573 241 ntBASIC3.76□□□□□ -1.81
MSH6P52701 RN7SL633P-201ENST00000488974 297 ntBASIC3.76□□□□□ -1.81
MSH6P52701 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.76□□□□□ -1.81
MSH6P52701 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 RNA5SP282-201ENST00000516355 108 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 AC022884.3-201ENST00000579571 248 ntBASIC3.76□□□□□ -1.81
MSH6P52701 KATNBL1P1-201ENST00000605192 748 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH6P52701 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH6P52701 OR5T3-201ENST00000303059 1023 ntBASIC3.76□□□□□ -1.81
MSH6P52701 MIR148B-201ENST00000362252 99 ntBASIC3.76□□□□□ -1.81
MSH6P52701 MIR512-1-201ENST00000384913 84 ntBASIC3.76□□□□□ -1.81
MSH6P52701 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
MSH6P52701 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.76□□□□□ -1.81
MSH6P52701 RPL7P10-201ENST00000417407 739 ntBASIC3.76□□□□□ -1.81
MSH6P52701 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 RPL23AP44-201ENST00000482216 473 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC092436.1-201ENST00000506450 503 ntBASIC3.76□□□□□ -1.81
MSH6P52701 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.76□□□□□ -1.81
MSH6P52701 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.76□□□□□ -1.81
MSH6P52701 AL049870.4-201ENST00000555741 486 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC022069.1-201ENST00000582910 658 ntBASIC3.76□□□□□ -1.81
MSH6P52701 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.76□□□□□ -1.81
MSH6P52701 AC010680.4-201ENST00000605334 543 ntBASIC3.76□□□□□ -1.81
MSH6P52701 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.76□□□□□ -1.81
MSH6P52701 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.75□□□□□ -1.81
MSH6P52701 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 AC093831.2-201ENST00000624393 3427 ntBASIC3.75□□□□□ -1.81
MSH6P52701 AL136964.1-201ENST00000622038 2990 ntBASIC3.75□□□□□ -1.81
MSH6P52701 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 AP001486.2-201ENST00000561652 5113 ntBASIC3.75□□□□□ -1.81
MSH6P52701 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 RNU6-40P-201ENST00000384254 107 ntBASIC3.75□□□□□ -1.81
MSH6P52701 EI24P2-201ENST00000397776 1076 ntBASIC3.75□□□□□ -1.81
MSH6P52701 RPL31P1-201ENST00000398116 372 ntBASIC3.75□□□□□ -1.81
MSH6P52701 RPL7P53-201ENST00000421245 739 ntBASIC3.75□□□□□ -1.81
MSH6P52701 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.75□□□□□ -1.81
MSH6P52701 RN7SL330P-201ENST00000469709 307 ntBASIC3.75□□□□□ -1.81
MSH6P52701 AC009039.2-201ENST00000624524 529 ntBASIC3.75□□□□□ -1.81
MSH6P52701 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
MSH6P52701 AC066616.2-201ENST00000559334 1481 ntBASIC3.74□□□□□ -1.81
MSH6P52701 AP000526.1-201ENST00000603308 1388 ntBASIC3.74□□□□□ -1.81
MSH6P52701 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
MSH6P52701 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.74□□□□□ -1.81
MSH6P52701 NPM1P10-201ENST00000398310 865 ntBASIC3.74□□□□□ -1.81
MSH6P52701 RN7SKP58-201ENST00000411010 305 ntBASIC3.74□□□□□ -1.81
MSH6P52701 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 TRGV6-201ENST00000417928 299 ntBASIC3.74□□□□□ -1.81
MSH6P52701 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH6P52701 HMGN2P3-201ENST00000433603 273 ntBASIC3.74□□□□□ -1.81
MSH6P52701 HMGN2P5-201ENST00000436882 273 ntBASIC3.74□□□□□ -1.81
MSH6P52701 AL513043.1-201ENST00000439124 535 ntBASIC3.74□□□□□ -1.81
MSH6P52701 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH6P52701 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH6P52701 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH6P52701 RNU6-362P-201ENST00000516736 90 ntBASIC3.74□□□□□ -1.81
MSH6P52701 RNA5SP380-201ENST00000517190 98 ntBASIC3.74□□□□□ -1.81
MSH6P52701 HMGB1P46-201ENST00000520062 610 ntBASIC3.74□□□□□ -1.81
MSH6P52701 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
MSH6P52701 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 CR589904.2-201ENST00000612533 440 ntBASIC3.74□□□□□ -1.81
MSH6P52701 AC009452.1-201ENST00000640823 606 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms