Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC009120.1-201ENST00000493458 473 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AC024451.1-201ENST00000508013 779 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 MTND3P25-201ENST00000509243 135 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 SCARNA18.1-201ENST00000516330 83 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AC103783.1-201ENST00000520506 373 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AC025755.1-201ENST00000521306 278 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.5□□□□□ -1.37
COL9A1P20849 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.5□□□□□ -1.37
COL9A1P20849 FKBP1BP1-201ENST00000553366 325 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC6.5□□□□□ -1.37
COL9A1P20849 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.5□□□□□ -1.37
COL9A1P20849 MRPL57P1-201ENST00000621486 265 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC6.5□□□□□ -1.37
COL9A1P20849 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
COL9A1P20849 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.5□□□□□ -1.37
COL9A1P20849 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 PANDAR-201ENST00000629595 1506 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 AC016745.2-201ENST00000608834 3443 ntBASIC6.5□□□□□ -1.37
COL9A1P20849 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
COL9A1P20849 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL9A1P20849 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC6.49□□□□□ -1.37
COL9A1P20849 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 RNA5SP391-201ENST00000363456 119 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 Y_RNA.272-201ENST00000364696 102 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 Y_RNA.358-201ENST00000365491 99 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 Y_RNA.488-201ENST00000384403 102 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 MIR223-201ENST00000385204 110 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC6.49□□□□□ -1.37
COL9A1P20849 RPL26P6-201ENST00000440913 438 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 Y_RNA.638-201ENST00000459374 113 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 AC021074.2-201ENST00000468434 172 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 VN1R105P-201ENST00000486595 910 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 RN7SL97P-201ENST00000486780 299 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 AC022206.1-201ENST00000495947 347 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 RNU2-31P-201ENST00000516954 155 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 AC130365.2-201ENST00000525882 1201 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.49□□□□□ -1.37
COL9A1P20849 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 MIR6864-201ENST00000617935 70 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL9A1P20849 AC074141.1-201ENST00000588129 2995 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 MFSD8-217ENST00000641178 4374 ntBASIC6.49□□□□□ -1.37
COL9A1P20849 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.49□□□□□ -1.37
COL9A1P20849 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL9A1P20849 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
COL9A1P20849 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.49□□□□□ -1.37
COL9A1P20849 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL9A1P20849 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
COL9A1P20849 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.48□□□□□ -1.37
COL9A1P20849 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL9A1P20849 RNU6-658P-201ENST00000384606 106 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 MIR521-1-201ENST00000384902 87 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 RNU6-131P-201ENST00000391144 107 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 Y_RNA.586-201ENST00000391146 98 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 DPPA2P2-201ENST00000418220 897 ntBASIC6.48□□□□□ -1.37
COL9A1P20849 RPL17P36-201ENST00000420302 549 ntBASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms