Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CYCSP24-201ENST00000445119 316 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 PPIAP3-201ENST00000450588 505 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 snoU13.7-201ENST00000459220 104 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC097493.1-201ENST00000463958 372 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC092757.1-201ENST00000467293 467 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC017015.1-201ENST00000477387 286 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC106872.3-201ENST00000495104 446 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 KCTD9P5-201ENST00000504141 1170 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A1P12109 LRRC34P2-201ENST00000514850 553 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A1P12109 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 OR5AP1P-201ENST00000529730 940 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AK6P1-201ENST00000540219 478 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.18□□□□□ -1.58
COL6A1P12109 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A1P12109 AC006349.1-201ENST00000555526 235 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.18□□□□□ -1.58
COL6A1P12109 AC093249.4-201ENST00000564755 259 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AC127024.5-201ENST00000580085 462 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.18□□□□□ -1.58
COL6A1P12109 AL139286.1-201ENST00000604465 483 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 AL009028.1-201ENST00000604895 802 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 SNX18P1Y-201ENST00000616231 511 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 THAP12P5-201ENST00000405864 2275 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 ZNF680P1-201ENST00000436625 1469 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL6A1P12109 ACTR3BP2-202ENST00000623630 1338 ntBASIC5.18□□□□□ -1.58
COL6A1P12109 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.18□□□□□ -1.58
COL6A1P12109 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.18□□□□□ -1.58
COL6A1P12109 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL6A1P12109 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-1293P-201ENST00000384077 107 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-356P-201ENST00000384140 107 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-809P-201ENST00000384461 107 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-1151P-201ENST00000384684 107 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AL022722.2-201ENST00000402519 180 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A1P12109 AL358934.1-201ENST00000432346 324 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 ARPC3P1-201ENST00000437218 533 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 SNRPEP7-201ENST00000438350 220 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 MTND6P13-201ENST00000443510 523 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 GAPDHP17-201ENST00000449858 1001 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 MTCO3P20-201ENST00000454926 688 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC099563.1-201ENST00000456086 418 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A1P12109 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A1P12109 RN7SL98P-201ENST00000462271 300 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RN7SL542P-201ENST00000467147 294 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RPS3AP14-201ENST00000483907 780 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A1P12109 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 RNF138P1-201ENST00000502765 546 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 AC026412.2-201ENST00000512270 1075 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-150P-201ENST00000516237 95 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-709P-201ENST00000517257 104 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A1P12109 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 RPL23AP53-201ENST00000521854 457 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A1P12109 MTND1P35-201ENST00000526739 508 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 AL512310.1-201ENST00000548639 172 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A1P12109 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.17□□□□□ -1.58
COL6A1P12109 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.17□□□□□ -1.58
COL6A1P12109 AL138976.2-201ENST00000563989 694 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 MIR4504-201ENST00000577413 92 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RN7SL176P-201ENST00000580352 264 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 NRBF2P1-201ENST00000587407 859 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 NRBF2P5-201ENST00000603087 788 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC091979.2-201ENST00000607514 214 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC243773.3-201ENST00000613270 256 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 RNU6-156P-201ENST00000621869 107 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC112204.3-201ENST00000623822 332 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 AC110994.2-201ENST00000635481 492 ntBASIC5.17□□□□□ -1.58
COL6A1P12109 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL6A1P12109 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.17□□□□□ -1.58
COL6A1P12109 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms