Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 SNORA25.1-201ENST00000362326 128 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-754P-201ENST00000391166 107 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AL590704.1-201ENST00000402856 794 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AL160275.3-201ENST00000423876 471 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC092573.2-201ENST00000434546 243 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 PPIAP13-201ENST00000434706 478 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 RPS11P1-201ENST00000451072 473 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC006511.1-201ENST00000470614 315 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 MINOS1P4-201ENST00000515470 318 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC104057.1-201ENST00000515547 497 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 SCARNA5-201ENST00000516201 276 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 WBP1LP3-201ENST00000523033 208 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 RPL7AP69-201ENST00000595306 806 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC073349.3-201ENST00000617616 186 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 U1.41-201ENST00000617626 165 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 TCL6_3.1-201ENST00000619064 137 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC110801.1-201ENST00000623590 212 ntBASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC011455.2-201ENST00000599320 3336 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC112243.1-201ENST00000623949 3851 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-1226P-201ENST00000384317 107 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AL590399.2-201ENST00000427536 309 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 MTATP6P4-201ENST00000427725 675 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC022022.1-201ENST00000430304 178 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-1012P-201ENST00000516606 109 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC009127.3-201ENST00000570531 403 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 MIR4504-201ENST00000577413 92 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 MIR4659A-201ENST00000580269 81 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC005514.1-201ENST00000623521 208 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC006600.2-201ENST00000624834 2506 ntBASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
VPS9D1Q9Y2B5 AC105235.1-201ENST00000623208 1816 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC114947.2-201ENST00000565748 2125 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 AC023245.2-201ENST00000530760 2978 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 RNU6-514P-201ENST00000384208 107 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 Y_RNA.569-201ENST00000384749 103 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SNORD78.2-201ENST00000391076 69 ntBASIC6.5□□□□□ -1.37
VPS9D1Q9Y2B5 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms