Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC091304.9-201ENST00000612091 226 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AL596245.1-201ENST00000618994 362 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC000374.1-201ENST00000434698 1745 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 MAPK10-349ENST00000641767 3661 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC091046.3-201ENST00000631455 1574 ntBASIC4.65□□□□□ -1.66
TDP1Q9NUW8 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
TDP1Q9NUW8 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
TDP1Q9NUW8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
TDP1Q9NUW8 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.65□□□□□ -1.66
TDP1Q9NUW8 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.65□□□□□ -1.66
TDP1Q9NUW8 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 Y_RNA.234-201ENST00000364409 97 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 MIR1193-201ENST00000408109 78 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 RNU6-195P-201ENST00000411352 109 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 MTND4LP11-201ENST00000422184 280 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL589872.1-201ENST00000426602 288 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL139415.2-201ENST00000431968 163 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 PTMAP3-201ENST00000447474 330 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC108078.1-201ENST00000508073 725 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 RNU6-201P-201ENST00000517100 61 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AP003181.2-201ENST00000528941 181 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC105233.3-201ENST00000531125 744 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC009101.1-201ENST00000568135 242 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC034268.2-201ENST00000571784 482 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC067852.4-201ENST00000590314 478 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL020997.2-201ENST00000602607 184 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC023043.4-201ENST00000612081 449 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC090517.2-201ENST00000614966 680 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC131238.1-201ENST00000617135 328 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC015914.2-201ENST00000618167 288 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL445567.2-201ENST00000618935 498 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL158209.2-201ENST00000619266 216 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 CR381653.2-201ENST00000624041 768 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AC068880.5-201ENST00000624331 290 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 AL157786.1-207ENST00000627771 695 ntBASIC4.65□□□□□ -1.67
TDP1Q9NUW8 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
TDP1Q9NUW8 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC092125.1-201ENST00000562568 1995 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 GNG5P1-201ENST00000255500 204 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RNVU1-3-201ENST00000364313 161 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 Y_RNA.248-201ENST00000364501 109 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RNU6-1283P-201ENST00000365314 105 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RNA5SP366-201ENST00000365454 123 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 SNORA70C-201ENST00000384538 135 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 MIR181A1-201ENST00000385026 110 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC078974.1-201ENST00000411597 223 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 SNRPFP1-201ENST00000414761 252 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 USP9YP36-201ENST00000424581 829 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 ISCA1P6-201ENST00000427740 390 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RPS27AP12-201ENST00000429552 465 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AL358934.1-201ENST00000432346 324 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 RPL7P52-201ENST00000449200 742 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC003071.1-201ENST00000451219 789 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 DHFRP3-201ENST00000455595 559 ntBASIC4.64□□□□□ -1.67
TDP1Q9NUW8 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.64□□□□□ -1.67
TDP1Q9NUW8 AC091167.1-201ENST00000492017 396 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 1754.7 ms