Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 USP9YP13-201ENST00000417797 480 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC008850.1-201ENST00000427546 362 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RPL34P20-201ENST00000442771 351 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL162388.1-201ENST00000450912 352 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC091180.1-201ENST00000462104 372 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RN7SL319P-201ENST00000480656 221 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AP001025.2-201ENST00000490908 477 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC010350.1-201ENST00000504908 231 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 OR5M7P-201ENST00000526140 972 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 HMGB1P33-201ENST00000563485 527 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL391840.1-201ENST00000571144 367 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RN7SL435P-201ENST00000584418 282 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC105254.2-201ENST00000603636 436 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC087783.2-201ENST00000605070 562 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC055876.5-201ENST00000605667 259 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 FAM25E-202ENST00000608562 189 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL627230.1-201ENST00000613077 211 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL591926.8-201ENST00000616876 211 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC112487.2-201ENST00000637950 304 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 A2MP1-204ENST00000566278 4130 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 OR11H4-201ENST00000315409 1082 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RNU4-73P-201ENST00000363164 141 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 Y_RNA.295-201ENST00000364918 102 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RHOT1P3-201ENST00000436571 331 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RPL7P11-201ENST00000437586 658 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC112498.1-201ENST00000444401 332 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 Z95327.1-201ENST00000446082 482 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL354714.3-201ENST00000447284 493 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 snoU109.4-201ENST00000458953 143 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 SCARNA10-201ENST00000459255 330 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 snoU13.3-201ENST00000459441 104 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RPL7AP28-201ENST00000464513 571 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RPS4XP10-201ENST00000465034 731 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RN7SL814P-201ENST00000487715 300 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC083829.1-201ENST00000503756 657 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 COX7A2P2-201ENST00000505291 250 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RNA5SP497-201ENST00000516081 97 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AP001893.2-201ENST00000526949 202 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 MIR4307-201ENST00000582802 84 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 IGHV3-29-201ENST00000604817 344 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AC009233.1-201ENST00000616477 371 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 IRF5P1-201ENST00000504852 2164 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL136964.1-201ENST00000622038 2990 ntBASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CLIP3Q96DZ5 AL133412.1-201ENST00000380194 2992 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms