Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
RNFT1Q5M7Z0 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
RNFT1Q5M7Z0 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC133552.1-201ENST00000569988 4007 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC062029.1-202ENST00000606164 3651 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 Y_RNA.16-201ENST00000362421 102 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RPL35AP31-201ENST00000418340 337 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AL354766.1-201ENST00000423396 542 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC073410.1-201ENST00000435125 589 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AL390119.1-201ENST00000440329 312 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CEACAMP7-201ENST00000444105 496 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 FTLP8-201ENST00000446770 267 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 BTF3P6-201ENST00000448054 499 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RPL23AP60-201ENST00000450011 454 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RBMY2TP-201ENST00000451162 947 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CFL1P4-201ENST00000451536 498 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 SNX18P26-201ENST00000458433 740 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 SNORD97-201ENST00000459187 142 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RN7SL193P-201ENST00000491708 276 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RPL23AP55-201ENST00000498163 452 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RBBP4P6-201ENST00000508098 202 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 NDUFB4P9-201ENST00000511646 388 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 RNA5SP271-201ENST00000516700 88 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC009643.1-201ENST00000532030 391 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 MRPS18CP4-201ENST00000535821 231 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC233702.7-202ENST00000582941 211 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC008555.7-201ENST00000605008 583 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC108706.1-201ENST00000611053 297 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 MIR6809-201ENST00000612189 116 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 MIR376A1-201ENST00000616574 68 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC024651.2-201ENST00000562480 2098 ntBASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
RNFT1Q5M7Z0 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AP000560.1-201ENST00000624150 1937 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 RNA5SP350-201ENST00000363298 111 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 RNY4P28-201ENST00000365281 93 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 DBIP1-201ENST00000401435 260 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 FTLP19-201ENST00000433300 394 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 CBX1P4-201ENST00000439415 457 ntBASIC5.57□□□□□ -1.52
RNFT1Q5M7Z0 AC018638.3-201ENST00000461273 132 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms