Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 CCDC58P2-201ENST00000417131 366 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 RWDD4P2-201ENST00000426392 563 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC010975.2-201ENST00000427781 588 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 RPS17P8-201ENST00000434525 335 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AL121871.1-201ENST00000443413 436 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC083829.1-201ENST00000503756 657 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 Y_RNA.672-201ENST00000516289 104 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 RNU1-6P-201ENST00000516290 144 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 SNORA18.6-201ENST00000516792 115 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC005951.1-201ENST00000576706 485 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 SNORA74C-1-201ENST00000580726 201 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 AC006254.3-201ENST00000603353 884 ntBASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC144BQ3MJ40 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 MIR195-201ENST00000385194 87 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 RNU1-82P-201ENST00000390851 165 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 RNU4-25P-201ENST00000410569 230 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC078974.1-201ENST00000411597 223 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 HMGN1P24-201ENST00000412282 298 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC092447.6-201ENST00000414578 210 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 RPS7P15-201ENST00000415804 584 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 C1DP2-201ENST00000418167 426 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC233728.2-201ENST00000425348 757 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AL162388.1-201ENST00000450912 352 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 RN7SL558P-201ENST00000497468 299 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC096751.1-202ENST00000502691 1067 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC138853.1-201ENST00000503549 823 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC017037.2-201ENST00000513850 890 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 RNU6-528P-201ENST00000516926 100 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 DEFB109D-201ENST00000529497 240 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 DUXAP4-201ENST00000603046 613 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC020910.2-201ENST00000603635 610 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 OR6R2P-201ENST00000609216 300 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 BX664608.1-201ENST00000610519 487 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC091834.1-201ENST00000614543 472 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC026585.1-201ENST00000619582 524 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC068831.8-201ENST00000620171 435 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 AC009268.2-201ENST00000621925 457 ntBASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC144BQ3MJ40 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 Z95331.1-201ENST00000623075 23112 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 AC007390.2-201ENST00000606229 3803 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 RNU6-1078P-201ENST00000364522 103 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 RNU6-114P-201ENST00000384704 105 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 AL583834.1-201ENST00000406943 343 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 AC099677.1-201ENST00000420575 175 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 BEND7P1-201ENST00000422058 457 ntBASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC144BQ3MJ40 RPS3AP44-201ENST00000425466 790 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms