Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.51□□□□□ -1.53
LIG3P49916 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 AP001029.3-201ENST00000588063 596 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AL121992.2-201ENST00000606262 256 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AC000068.2-201ENST00000608816 460 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.51□□□□□ -1.53
LIG3P49916 AC103710.2-201ENST00000609912 942 ntBASIC5.51□□□□□ -1.53
LIG3P49916 AC002550.2-201ENST00000621246 394 ntBASIC5.51□□□□□ -1.53
LIG3P49916 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIG3P49916 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIG3P49916 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.51□□□□□ -1.53
LIG3P49916 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.5□□□□□ -1.53
LIG3P49916 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 Y_RNA.162-201ENST00000363683 102 ntBASIC5.5□□□□□ -1.53
LIG3P49916 RNU1-77P-201ENST00000390868 162 ntBASIC5.5□□□□□ -1.53
LIG3P49916 U3.29-201ENST00000391296 212 ntBASIC5.5□□□□□ -1.53
LIG3P49916 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.5□□□□□ -1.53
LIG3P49916 MTCO2P12-201ENST00000427426 682 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.5□□□□□ -1.53
LIG3P49916 MTND3P16-201ENST00000452205 344 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.5□□□□□ -1.53
LIG3P49916 RNU7-59P-201ENST00000459101 61 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AL591473.1-201ENST00000464297 313 ntBASIC5.5□□□□□ -1.53
LIG3P49916 HMGN1P10-201ENST00000474557 553 ntBASIC5.5□□□□□ -1.53
LIG3P49916 RN7SL177P-201ENST00000476596 299 ntBASIC5.5□□□□□ -1.53
LIG3P49916 RN7SL629P-201ENST00000489622 285 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AC091912.1-201ENST00000511351 248 ntBASIC5.5□□□□□ -1.53
LIG3P49916 RNU7-51P-201ENST00000516560 62 ntBASIC5.5□□□□□ -1.53
LIG3P49916 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.5□□□□□ -1.53
LIG3P49916 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC5.5□□□□□ -1.53
LIG3P49916 BNIP3P1-201ENST00000547295 580 ntBASIC5.5□□□□□ -1.53
LIG3P49916 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.5□□□□□ -1.53
LIG3P49916 AL121821.2-201ENST00000556081 394 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.5□□□□□ -1.53
LIG3P49916 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.5□□□□□ -1.53
LIG3P49916 AP005403.1-201ENST00000579720 229 ntBASIC5.5□□□□□ -1.53
LIG3P49916 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 MIR4742-201ENST00000581069 85 ntBASIC5.5□□□□□ -1.53
LIG3P49916 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
LIG3P49916 AC015908.5-201ENST00000623289 343 ntBASIC5.5□□□□□ -1.53
LIG3P49916 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 NEAT1-202ENST00000501122 22743 ntBASIC5.5□□□□□ -1.53
LIG3P49916 AC100757.1-201ENST00000616872 1835 ntBASIC5.5□□□□□ -1.53
LIG3P49916 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIG3P49916 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.5□□□□□ -1.53
LIG3P49916 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 NXPH1-205ENST00000602349 1953 ntBASIC5.49□□□□□ -1.53
LIG3P49916 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.49□□□□□ -1.53
LIG3P49916 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.49□□□□□ -1.53
LIG3P49916 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.49□□□□□ -1.53
LIG3P49916 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.49□□□□□ -1.53
LIG3P49916 Y_RNA.419-201ENST00000384041 102 ntBASIC5.49□□□□□ -1.53
LIG3P49916 SNORA16A-201ENST00000384342 137 ntBASIC5.49□□□□□ -1.53
LIG3P49916 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LIG3P49916 ENSAP1-201ENST00000392855 326 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AL356967.1-201ENST00000406305 431 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RNU6-1148P-201ENST00000410992 104 ntBASIC5.49□□□□□ -1.53
LIG3P49916 CHEK2P3-201ENST00000416118 248 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 OR1AA1P-201ENST00000419597 916 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.49□□□□□ -1.53
LIG3P49916 ERLEC1P1-201ENST00000433806 578 ntBASIC5.49□□□□□ -1.53
LIG3P49916 CYCSP6-201ENST00000434498 302 ntBASIC5.49□□□□□ -1.53
LIG3P49916 NDUFA5P4-201ENST00000436704 385 ntBASIC5.49□□□□□ -1.53
LIG3P49916 MTND4P19-201ENST00000446659 478 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AC105399.1-202ENST00000447303 205 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AC011225.1-201ENST00000457751 369 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RNU7-182P-201ENST00000459009 62 ntBASIC5.49□□□□□ -1.53
LIG3P49916 OR2AO1P-201ENST00000476497 403 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RN7SL214P-201ENST00000487317 265 ntBASIC5.49□□□□□ -1.53
LIG3P49916 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 AC112206.3-201ENST00000514578 389 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RNU2-10P-201ENST00000516375 211 ntBASIC5.49□□□□□ -1.53
LIG3P49916 RNU6-798P-201ENST00000516912 103 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AP000857.1-201ENST00000532151 543 ntBASIC5.49□□□□□ -1.53
LIG3P49916 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 PSMA3P-201ENST00000555485 635 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms