Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 UBTFL10-201ENST00000528532 562 ntBASIC3.4□□□□□ -1.87
CDX1P47902 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.4□□□□□ -1.87
CDX1P47902 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 UBE2NP1-201ENST00000545592 458 ntBASIC3.4□□□□□ -1.87
CDX1P47902 ELOCP32-201ENST00000548625 324 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.4□□□□□ -1.87
CDX1P47902 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 AL590392.1-201ENST00000604960 446 ntBASIC3.4□□□□□ -1.87
CDX1P47902 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 TUG1_1.1-201ENST00000610654 145 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 AC015967.1-201ENST00000619893 476 ntBASIC3.4□□□□□ -1.87
CDX1P47902 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 AC024560.2-201ENST00000507981 1497 ntBASIC3.4□□□□□ -1.87
CDX1P47902 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 AL133383.2-201ENST00000622958 2336 ntBASIC3.39□□□□□ -1.87
CDX1P47902 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 AC104454.1-201ENST00000421341 1401 ntBASIC3.39□□□□□ -1.87
CDX1P47902 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 AL161781.1-201ENST00000354277 403 ntBASIC3.39□□□□□ -1.87
CDX1P47902 RNU6-462P-201ENST00000362659 105 ntBASIC3.39□□□□□ -1.87
CDX1P47902 RNU1-18P-201ENST00000363062 164 ntBASIC3.39□□□□□ -1.87
CDX1P47902 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 TAS2R15P-201ENST00000390674 928 ntBASIC3.39□□□□□ -1.87
CDX1P47902 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 SNORA74C-2-201ENST00000411179 201 ntBASIC3.39□□□□□ -1.87
CDX1P47902 RPS20P14-201ENST00000412545 360 ntBASIC3.39□□□□□ -1.87
CDX1P47902 BEND7P1-201ENST00000422058 457 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 DUTP6-201ENST00000425573 462 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.39□□□□□ -1.87
CDX1P47902 AL035407.1-201ENST00000429211 571 ntBASIC3.39□□□□□ -1.87
CDX1P47902 TXNL1P1-201ENST00000429528 554 ntBASIC3.39□□□□□ -1.87
CDX1P47902 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 HMGB1P12-201ENST00000438594 598 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AL121871.1-201ENST00000443413 436 ntBASIC3.39□□□□□ -1.87
CDX1P47902 MTND1P31-201ENST00000449206 961 ntBASIC3.39□□□□□ -1.87
CDX1P47902 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.39□□□□□ -1.87
CDX1P47902 AC091167.1-201ENST00000492017 396 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AC021146.5-201ENST00000503544 545 ntBASIC3.39□□□□□ -1.87
CDX1P47902 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.39□□□□□ -1.87
CDX1P47902 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.39□□□□□ -1.87
CDX1P47902 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.39□□□□□ -1.87
CDX1P47902 AC093677.1-201ENST00000514414 678 ntBASIC3.39□□□□□ -1.87
CDX1P47902 RNA5SP216-201ENST00000516111 123 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.39□□□□□ -1.87
CDX1P47902 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.39□□□□□ -1.87
CDX1P47902 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.39□□□□□ -1.87
CDX1P47902 FAM60BP-201ENST00000578364 658 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AC023575.1-201ENST00000580510 358 ntBASIC3.39□□□□□ -1.87
CDX1P47902 MIR3939-201ENST00000582614 106 ntBASIC3.39□□□□□ -1.87
CDX1P47902 KPNA2P3-201ENST00000584190 848 ntBASIC3.39□□□□□ -1.87
CDX1P47902 MIR4999-201ENST00000585029 91 ntBASIC3.39□□□□□ -1.87
CDX1P47902 MIR3138-201ENST00000585238 82 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AC092653.1-201ENST00000608509 531 ntBASIC3.39□□□□□ -1.87
CDX1P47902 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.39□□□□□ -1.87
CDX1P47902 AL590099.1-201ENST00000615276 138 ntBASIC3.39□□□□□ -1.87
CDX1P47902 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 AL590240.3-201ENST00000621416 943 ntBASIC3.39□□□□□ -1.87
CDX1P47902 AL360181.4-201ENST00000621752 134 ntBASIC3.39□□□□□ -1.87
CDX1P47902 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
CDX1P47902 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CDX1P47902 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
CDX1P47902 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDX1P47902 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDX1P47902 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CDX1P47902 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.38□□□□□ -1.87
CDX1P47902 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDX1P47902 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CDX1P47902 RNA5SP175-201ENST00000364275 119 ntBASIC3.38□□□□□ -1.87
CDX1P47902 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CDX1P47902 RSL24D1P4-201ENST00000400938 484 ntBASIC3.38□□□□□ -1.87
CDX1P47902 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC3.38□□□□□ -1.87
CDX1P47902 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CDX1P47902 AL022400.1-201ENST00000423946 935 ntBASIC3.38□□□□□ -1.87
CDX1P47902 RSL24D1P6-201ENST00000426934 401 ntBASIC3.38□□□□□ -1.87
CDX1P47902 AC011742.1-201ENST00000431448 434 ntBASIC3.38□□□□□ -1.87
CDX1P47902 RPS3AP54-201ENST00000435535 734 ntBASIC3.38□□□□□ -1.87
CDX1P47902 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.38□□□□□ -1.87
CDX1P47902 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.38□□□□□ -1.87
CDX1P47902 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms