Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL591767.3-201ENST00000554632 525 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC067852.5-201ENST00000589299 310 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AC093227.2-201ENST00000589357 285 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 FKBP1AP1-201ENST00000594588 318 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.35□□□□□ -1.55
COL8A1P27658 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 OLMALINC-203ENST00000641087 3779 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 AL139384.2-201ENST00000613809 3590 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL8A1P27658 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
COL8A1P27658 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL8A1P27658 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL8A1P27658 AC027088.4-201ENST00000611559 1947 ntBASIC5.35□□□□□ -1.55
COL8A1P27658 PABPC1P6-201ENST00000445594 1829 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 CASC19-228ENST00000641414 1684 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 AC112243.1-201ENST00000623949 3851 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNA5SP258-201ENST00000362750 119 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNU1-76P-201ENST00000362903 159 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNU6-1020P-201ENST00000363684 107 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNU6-596P-201ENST00000365395 98 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNU5E-6P-201ENST00000365574 115 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 MIR517A-201ENST00000385001 87 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 SNORA53-201ENST00000391141 249 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 MIR1286-201ENST00000408112 78 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RN7SKP222-201ENST00000410651 315 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RNU4-78P-201ENST00000410940 126 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 AL035461.1-201ENST00000421490 332 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 AC093655.2-201ENST00000425735 631 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC245884.2-201ENST00000426257 404 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 RPL23AP22-201ENST00000437556 453 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.34□□□□□ -1.55
COL8A1P27658 RPL36AP13-201ENST00000457490 317 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC087477.1-201ENST00000465747 340 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 COX6CP14-201ENST00000469580 174 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 OR2AO1P-201ENST00000476497 403 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 AP001086.1-201ENST00000494882 321 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 SEPT14P8-201ENST00000508026 178 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 AL671862.1-201ENST00000515851 349 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC5.34□□□□□ -1.55
COL8A1P27658 RNU6-685P-201ENST00000517088 95 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC073581.1-201ENST00000519036 575 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 RAB9BP1-201ENST00000519581 626 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 RANP3-201ENST00000530970 276 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 AC126177.3-201ENST00000551839 688 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AL359219.2-201ENST00000555184 348 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AL121576.1-201ENST00000556055 276 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
COL8A1P27658 AC005341.1-201ENST00000571086 708 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 MIR4301-201ENST00000577203 66 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 SNORD39.2-201ENST00000579995 76 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 IMMP1LP3-201ENST00000604197 224 ntBASIC5.34□□□□□ -1.55
COL8A1P27658 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.34□□□□□ -1.55
COL8A1P27658 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL8A1P27658 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL8A1P27658 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL8A1P27658 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.34□□□□□ -1.56
COL8A1P27658 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.34□□□□□ -1.56
COL8A1P27658 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms