Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AC074250.1-201ENST00000511117 192 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 VIS1.1-201ENST00000610517 203 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC092650.2-201ENST00000619984 902 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC097372.4-201ENST00000625025 466 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
KLHL28Q9NXS3 AL645568.2-201ENST00000432815 1337 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 MTCO1P4-201ENST00000520516 1409 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC017071.1-201ENST00000564407 2204 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 FRG1CP-201ENST00000358464 769 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNA5SP258-201ENST00000362750 119 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNU6-609P-201ENST00000365459 107 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNU6-730P-201ENST00000383954 104 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNU6-932P-201ENST00000391108 106 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 BX664727.1-201ENST00000416024 466 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 DPPA2P1-201ENST00000428060 556 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AP000907.1-201ENST00000428428 510 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC140076.1-201ENST00000449897 361 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 SNORD59.2-201ENST00000516873 68 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AL121603.1-201ENST00000553815 142 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC006557.5-201ENST00000603126 811 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 ELOCP35-201ENST00000604289 336 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC096577.2-201ENST00000611455 153 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AC243312.2-201ENST00000623340 601 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 AL590396.4-201ENST00000636779 956 ntBASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
KLHL28Q9NXS3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
KLHL28Q9NXS3 AC007823.1-201ENST00000569932 1566 ntBASIC3.21□□□□□ -1.89
KLHL28Q9NXS3 AC058791.1-201ENST00000608412 3198 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC130650.2-201ENST00000618736 2403 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC110774.1-201ENST00000623567 2018 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC032011.1-201ENST00000611703 1549 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 RNU1-75P-201ENST00000347264 129 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 MIR30E-201ENST00000362104 92 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 SNORD9-201ENST00000362566 104 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 MTND4LP20-201ENST00000402379 270 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 RPS7P15-201ENST00000415804 584 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 RPL23AP82-202ENST00000427528 469 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 TRIM60P18-201ENST00000441518 828 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 RPS3AP12-201ENST00000443616 753 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 RPL21P23-201ENST00000446654 460 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC008264.1-201ENST00000447612 367 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC093392.2-201ENST00000450682 337 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC073387.1-201ENST00000453261 709 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 CENPBD1P1-201ENST00000464061 469 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AL136126.1-201ENST00000473603 402 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC011352.3-201ENST00000505162 593 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 PHBP14-201ENST00000512887 367 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AC027338.1-201ENST00000514840 825 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AP000790.1-201ENST00000528891 737 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 LSM6P2-201ENST00000552208 177 ntBASIC3.21□□□□□ -1.9
KLHL28Q9NXS3 MTCO1P40-201ENST00000574371 625 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms