Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AL592293.2-201ENST00000422292 996 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 USP9YP36-201ENST00000424581 829 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC234779.1-201ENST00000425910 285 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 RNU1-6P-201ENST00000516290 144 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 RNA5SP392-201ENST00000516905 112 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 DEFB131D-201ENST00000526803 184 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AP003122.4-201ENST00000530980 758 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC090515.3-201ENST00000560431 315 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC012182.1-201ENST00000570133 895 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC069061.3-201ENST00000582254 823 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.83□□□□□ -1.64
USP39Q53GS9 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 KC877982.1-201ENST00000602313 470 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AL391646.1-201ENST00000603860 190 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AL121932.1-201ENST00000605542 214 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AP004247.3-201ENST00000608682 624 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC093788.1-201ENST00000609356 927 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AL132765.2-201ENST00000610812 351 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.83□□□□□ -1.64
USP39Q53GS9 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.83□□□□□ -1.64
USP39Q53GS9 FARSBP1-201ENST00000435808 1778 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 AC114546.3-201ENST00000623582 1734 ntBASIC4.83□□□□□ -1.64
USP39Q53GS9 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
USP39Q53GS9 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
USP39Q53GS9 RNU6-582P-201ENST00000362989 107 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 Y_RNA.86-201ENST00000363020 111 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 SNORA73.1-201ENST00000363107 205 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 RNU6-216P-201ENST00000363282 104 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 RNU6-1085P-201ENST00000363576 107 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 SNORD116-23-201ENST00000384645 92 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL450338.1-201ENST00000407987 512 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 MIR1193-201ENST00000408109 78 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 RNU4-25P-201ENST00000410569 230 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 RNA5SP345-201ENST00000410646 108 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL450992.3-201ENST00000413192 568 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 BOLA3P4-201ENST00000418151 400 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 PDCL2P1-201ENST00000419302 352 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC048351.1-201ENST00000420064 602 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 OR2AH1P-201ENST00000425717 928 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC004975.1-201ENST00000428733 208 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 RPL21P110-201ENST00000433345 446 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 TAAR7P-201ENST00000436141 242 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL590365.1-201ENST00000450788 243 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL691482.1-201ENST00000453255 87 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 MTCO3P20-201ENST00000454926 688 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.82□□□□□ -1.64
USP39Q53GS9 RPS17P2-201ENST00000461663 408 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 TRBV8-2-201ENST00000475637 270 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 FAM172BP-201ENST00000487497 1089 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC096576.1-201ENST00000489014 359 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.82□□□□□ -1.64
USP39Q53GS9 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 HMGB3P16-201ENST00000508037 287 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
USP39Q53GS9 RNA5SP464-201ENST00000516251 108 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 HMGB1P23-201ENST00000518743 568 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC005868.1-201ENST00000536421 331 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL359212.1-201ENST00000556608 614 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC087477.6-201ENST00000559595 843 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms