Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 U3.12-201ENST00000364498 214 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RN7SKP153-201ENST00000365026 316 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
SOX4Q06945 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 SNORA51.8-201ENST00000384234 132 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RNU6-903P-201ENST00000391270 109 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AL121834.1-202ENST00000404494 277 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AL606923.1-201ENST00000406616 190 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 MIR548F4-201ENST00000408515 105 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RNA5SP345-201ENST00000410646 108 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 Y_RNA.618-201ENST00000410949 107 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RPL37P10-201ENST00000412884 288 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC114482.1-201ENST00000418010 247 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC048351.1-201ENST00000420064 602 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 DDX39BP1-205ENST00000422507 192 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 CHIAP3-201ENST00000423668 1133 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 RPL7AP49-201ENST00000429522 581 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 BX323845.1-201ENST00000432417 179 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AL591438.1-201ENST00000433508 581 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 HMGB3P11-201ENST00000440127 604 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC093156.1-201ENST00000440382 670 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC114495.1-201ENST00000441274 436 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 PRPS1P1-201ENST00000445305 876 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.54□□□□□ -1.52
SOX4Q06945 KNOP1P3-201ENST00000446933 426 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.54□□□□□ -1.52
SOX4Q06945 snoU13.20-201ENST00000459180 104 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RPS24P16-201ENST00000497294 392 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 RNU6-1088P-201ENST00000516850 104 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RNU6-273P-201ENST00000516937 96 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 AP000676.2-201ENST00000529711 301 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.54□□□□□ -1.52
SOX4Q06945 RPL21P12-201ENST00000559810 515 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC018552.3-201ENST00000567416 561 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC068790.3-201ENST00000602988 553 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 AL121992.2-201ENST00000606262 256 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 OR6R2P-201ENST00000609216 300 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC007546.1-201ENST00000619452 559 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 U4.1-201ENST00000620349 87 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 MIR6839-201ENST00000620425 113 ntBASIC5.54□□□□□ -1.52
SOX4Q06945 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.54□□□□□ -1.52
SOX4Q06945 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SOX4Q06945 RNA5SP453-201ENST00000362503 119 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 PARD3-204ENST00000374768 799 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 RNU6-39P-201ENST00000384344 107 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 RNU6-985P-201ENST00000410182 104 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 RN7SKP158-201ENST00000410453 326 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 RN7SKP247-201ENST00000411094 308 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC009302.1-201ENST00000417147 390 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 MTCYBP10-201ENST00000424905 650 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 AL161722.2-201ENST00000434731 981 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX4Q06945 NANOGP10-201ENST00000453325 895 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC022133.1-201ENST00000490961 571 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 MYL12AP1-201ENST00000518490 515 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AP005435.4-201ENST00000529514 284 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 PTP4A1P6-201ENST00000531034 478 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX4Q06945 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.53□□□□□ -1.52
SOX4Q06945 uc_338.12-201ENST00000616344 181 ntBASIC5.53□□□□□ -1.52
SOX4Q06945 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX4Q06945 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX4Q06945 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms