Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 NIPA2P2-201ENST00000496376 1083 ntBASIC1.77□□□□□ -2.13
PRKDCP78527 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC1.77□□□□□ -2.13
PRKDCP78527 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC1.77□□□□□ -2.13
PRKDCP78527 AC074029.1-201ENST00000552531 1044 ntBASIC1.77□□□□□ -2.13
PRKDCP78527 MFSD8-245ENST00000641743 948 ntBASIC1.77□□□□□ -2.13
PRKDCP78527 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC1.77□□□□□ -2.13
PRKDCP78527 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC1.77□□□□□ -2.13
PRKDCP78527 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC1.77□□□□□ -2.13
PRKDCP78527 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
PRKDCP78527 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 LAP3P1-201ENST00000403648 294 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 RHEBP3-201ENST00000411920 351 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AC004866.2-201ENST00000438285 481 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AC011037.1-201ENST00000483964 558 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AC107398.1-201ENST00000486904 505 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 SNORA64.4-201ENST00000516632 81 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC1.76□□□□□ -2.13
PRKDCP78527 RGS4-209ENST00000531057 544 ntTSL 4 BASIC1.76□□□□□ -2.13
PRKDCP78527 MIR3199-1-201ENST00000582434 88 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AC110994.2-201ENST00000635481 492 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC1.76□□□□□ -2.13
PRKDCP78527 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
PRKDCP78527 RFX3-203ENST00000381984 364 ntTSL 3 BASIC1.76□□□□□ -2.13
PRKDCP78527 SPA17P1-201ENST00000416656 452 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.76□□□□□ -2.13
PRKDCP78527 AC068781.1-201ENST00000488231 618 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 RNY1P10-201ENST00000363268 113 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 LUZP4P1-201ENST00000415420 344 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 CEACAMP4-201ENST00000457676 421 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 MTCYBP28-201ENST00000566728 1132 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 MUC2-202ENST00000613187 4845 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AC026241.1-201ENST00000517873 2142 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 AC083843.2-201ENST00000568248 6253 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PRKDCP78527 MIR337-201ENST00000362281 93 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 RNU6-392P-201ENST00000364926 101 ntBASIC1.76□□□□□ -2.13
PRKDCP78527 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.76□□□□□ -2.13
PRKDCP78527 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 AP000526.1-201ENST00000603308 1388 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 RNU1-35P-201ENST00000362782 153 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.75□□□□□ -2.13
PRKDCP78527 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC1.75□□□□□ -2.13
PRKDCP78527 HMGB3P8-201ENST00000449709 577 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AC016687.1-201ENST00000482574 353 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 RAD51AP1P1-201ENST00000484195 1001 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AC005840.1-201ENST00000498412 377 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.75□□□□□ -2.13
PRKDCP78527 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC1.75□□□□□ -2.13
PRKDCP78527 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 RNA5SP325-201ENST00000363756 130 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 Y_RNA.374-201ENST00000365606 101 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.75□□□□□ -2.13
PRKDCP78527 PTP4A1P7-201ENST00000423476 514 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AC080013.2-201ENST00000460866 323 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 LINC00216-201ENST00000623548 1126 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
PRKDCP78527 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.75□□□□□ -2.13
PRKDCP78527 B3GALNT1P1-201ENST00000420569 975 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 AL353684.1-201ENST00000622677 1120 ntBASIC1.75□□□□□ -2.13
PRKDCP78527 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
PRKDCP78527 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.75□□□□□ -2.13
PRKDCP78527 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
PRKDCP78527 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.74□□□□□ -2.13
PRKDCP78527 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC1.74□□□□□ -2.13
PRKDCP78527 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
PRKDCP78527 RNU6-582P-201ENST00000362989 107 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 AC009238.1-201ENST00000442165 424 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 AC009237.6-201ENST00000446969 424 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.74□□□□□ -2.13
PRKDCP78527 LINC00901.1-201ENST00000617252 152 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 AC010378.1-201ENST00000619270 362 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 MTND4P10-201ENST00000446199 1363 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
PRKDCP78527 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
PRKDCP78527 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
PRKDCP78527 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
PRKDCP78527 OR52B1P-201ENST00000316506 909 ntBASIC1.74□□□□□ -2.13
PRKDCP78527 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC1.74□□□□□ -2.13
PRKDCP78527 SKINT1L-201ENST00000401057 817 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms