Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HMGB1P29-201ENST00000505659 499 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 KCTD9P2-201ENST00000512203 1013 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC010493.1-201ENST00000513479 292 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A1P12109 OR5AL2P-201ENST00000532185 920 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 AC124068.1-201ENST00000563131 678 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A1P12109 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 AC233702.9-201ENST00000581528 203 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.22□□□□□ -1.57
COL6A1P12109 MIR3158-1-201ENST00000583596 81 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A1P12109 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AP003122.6-201ENST00000623831 495 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 U3.53-201ENST00000628922 216 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 MIR4496-201ENST00000635896 61 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A1P12109 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.22□□□□□ -1.57
COL6A1P12109 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL6A1P12109 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL6A1P12109 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A1P12109 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL6A1P12109 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL6A1P12109 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5.21□□□□□ -1.57
COL6A1P12109 AL445487.1-201ENST00000415694 1580 ntBASIC5.21□□□□□ -1.57
COL6A1P12109 AC092326.2-201ENST00000624772 1561 ntBASIC5.21□□□□□ -1.57
COL6A1P12109 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A1P12109 MUC2-202ENST00000613187 4845 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 SNORA70.4-201ENST00000365509 134 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 MIR659-201ENST00000384963 97 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC073264.1-201ENST00000411508 416 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 RPL21P111-201ENST00000418453 477 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A1P12109 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A1P12109 AC073464.1-201ENST00000429823 534 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AL451074.3-201ENST00000437709 472 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 ACTR3P3-201ENST00000480448 893 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC5.21□□□□□ -1.58
COL6A1P12109 AC114981.1-201ENST00000503897 678 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 IGLVIV-65-201ENST00000517313 360 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A1P12109 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 OR8R1P-201ENST00000543943 764 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A1P12109 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.21□□□□□ -1.58
COL6A1P12109 MIR3682-201ENST00000581338 84 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 PRPF19P1-201ENST00000584766 898 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.21□□□□□ -1.58
COL6A1P12109 AC060780.3-201ENST00000589464 80 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 AL591034.3-201ENST00000605511 685 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC064836.2-201ENST00000609491 462 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AL020991.1-201ENST00000612314 373 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL6A1P12109 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A1P12109 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.21□□□□□ -1.58
COL6A1P12109 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A1P12109 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A1P12109 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL6A1P12109 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL6A1P12109 GDI2P1-201ENST00000429312 1336 ntBASIC5.21□□□□□ -1.58
COL6A1P12109 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
COL6A1P12109 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL6A1P12109 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL6A1P12109 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A1P12109 FARSBP1-201ENST00000435808 1778 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC021146.4-201ENST00000309229 279 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL6A1P12109 Y_RNA.89-201ENST00000363031 102 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 RNU6-534P-201ENST00000364877 106 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 SNORA71.2-201ENST00000364941 134 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 RNU6-533P-201ENST00000384144 107 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 MIR153-1-201ENST00000384914 90 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 RPS3AP36-201ENST00000398190 775 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 PPIAP31-201ENST00000405422 495 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC011933.1-201ENST00000413334 321 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 USP9YP27-201ENST00000418455 438 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.2□□□□□ -1.58
COL6A1P12109 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL6A1P12109 MTCYBP45-201ENST00000435243 565 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 HSFY6P-201ENST00000445573 403 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AL590365.1-201ENST00000450788 243 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC116533.1-201ENST00000459748 321 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 RPL21P103-201ENST00000479921 488 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC013828.1-201ENST00000481845 158 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC105137.1-201ENST00000484355 562 ntBASIC5.2□□□□□ -1.58
COL6A1P12109 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms