Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL162713.1-201ENST00000604480 262 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC009948.4-201ENST00000604692 675 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC112220.2-201ENST00000605513 533 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC013244.3-201ENST00000605614 388 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC4P09017 AP001033.2-201ENST00000609701 1003 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC138932.5-201ENST00000617759 563 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AP003476.1-201ENST00000623984 516 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC126544.2-201ENST00000625174 749 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 AC097655.1-201ENST00000635075 318 ntBASIC3.22□□□□□ -1.89
HOXC4P09017 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXC4P09017 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXC4P09017 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
HOXC4P09017 SRP72P2-201ENST00000344851 1979 ntBASIC3.21□□□□□ -1.89
HOXC4P09017 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.21□□□□□ -1.89
HOXC4P09017 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.89
HOXC4P09017 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.21□□□□□ -1.89
HOXC4P09017 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 RNU1-70P-201ENST00000362618 164 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 RNU6-481P-201ENST00000384194 107 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 PRRC2CP1-201ENST00000404428 159 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 RNA5SP229-201ENST00000410809 99 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 UBE2V1P11-201ENST00000411559 285 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 AC106883.1-201ENST00000418805 562 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AL606495.1-201ENST00000422100 813 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AL353678.1-201ENST00000422735 741 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC4P09017 VN1R42P-201ENST00000424651 344 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 PSMA2P3-201ENST00000429685 675 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC4P09017 AC006994.1-201ENST00000438212 839 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
HOXC4P09017 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 BX276092.4-201ENST00000452056 248 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 RPS20P32-201ENST00000456044 356 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 snoU13.7-201ENST00000459220 104 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 RPS3AP43-201ENST00000479743 781 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AC092185.1-201ENST00000491371 97 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 RN7SL504P-201ENST00000494496 287 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 SUMO2P5-201ENST00000506790 245 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC4P09017 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC4P09017 RN7SKP60-201ENST00000516985 239 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXC4P09017 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXC4P09017 AC025918.2-201ENST00000558683 763 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 GTF2IP8-201ENST00000560687 584 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 ZNF192P1-203ENST00000565888 810 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AGGF1P5-201ENST00000567900 919 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 MIR2682-201ENST00000580305 110 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 MIR4425-201ENST00000580572 84 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 AC008507.2-201ENST00000588402 1176 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC4P09017 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AL357094.1-201ENST00000603845 844 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 AC124312.4-201ENST00000605533 310 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC4P09017 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC4P09017 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 AC091953.5-201ENST00000622919 233 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXC4P09017 GABPAP-201ENST00000419271 1356 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXC4P09017 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXC4P09017 MTCO1P24-201ENST00000515438 1558 ntBASIC3.21□□□□□ -1.9
HOXC4P09017 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HOXC4P09017 AC021755.1-201ENST00000559747 1447 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 AC046144.1-201ENST00000478559 1853 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 AL512646.1-201ENST00000269395 1077 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 RNU6-252P-201ENST00000363232 107 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 RNU6-354P-201ENST00000383862 107 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 RNU6-610P-201ENST00000384264 107 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXC4P09017 RNU2-37P-201ENST00000410695 177 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 TATDN1P1-201ENST00000414123 891 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL158825.1-201ENST00000414735 521 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC063979.1-201ENST00000415539 377 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AC241520.1-201ENST00000422654 1099 ntBASIC3.2□□□□□ -1.9
HOXC4P09017 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms