Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 EIF4EP1-201ENST00000422311 642 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL359955.2-201ENST00000445380 353 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 EEF1A1P1-201ENST00000447052 739 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL596266.1-201ENST00000448132 400 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL162388.1-201ENST00000450912 352 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC002553.2-201ENST00000453217 340 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC006539.1-201ENST00000481419 501 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 COX7A2P2-201ENST00000505291 250 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 FTH1P9-201ENST00000513251 355 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-189P-201ENST00000516120 101 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 Y_RNA.708-201ENST00000516950 96 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 TXNP4-201ENST00000575018 310 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC092447.9-201ENST00000603395 144 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC145423.1-201ENST00000605712 336 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL021918.2-201ENST00000613415 194 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 ATP5A1P2-202ENST00000616464 443 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC025034.2-201ENST00000623264 286 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC111152.1-202ENST00000635848 339 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 MTCO1P24-201ENST00000515438 1558 ntBASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HIF3AQ9Y2N7 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-874P-201ENST00000362390 105 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-82P-201ENST00000363970 107 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-188P-201ENST00000364207 107 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU4-2-201ENST00000365668 141 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU1-74P-201ENST00000384108 171 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL031985.1-201ENST00000392713 418 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL136372.1-201ENST00000403060 228 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC016739.1-201ENST00000405359 345 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RN7SKP86-201ENST00000410454 332 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC114491.1-201ENST00000416095 246 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 HMGB1P9-201ENST00000429856 646 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RPL36AP6-201ENST00000435770 321 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 GEMIN2P1-201ENST00000454246 752 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RPL12P39-201ENST00000455456 496 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC004129.2-201ENST00000457229 287 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 HMGB3P30-201ENST00000457863 606 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU1-88P-201ENST00000459274 128 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC011476.1-201ENST00000466725 307 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC104472.2-201ENST00000469035 601 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 HMGB1P21-201ENST00000502313 581 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC116337.1-201ENST00000509680 687 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-470P-201ENST00000515954 104 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 RNU6-406P-201ENST00000516470 107 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 SNORD116.3-201ENST00000517176 78 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 OR11H5P-201ENST00000554039 926 ntBASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.28□□□□□ -1.56
HIF3AQ9Y2N7 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms