Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 FTLP6-201ENST00000355274 422 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 RNU6-356P-201ENST00000384140 107 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 BLOC1S2P1-201ENST00000428431 301 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AC241584.1-201ENST00000438469 1241 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 BOLA3P3-201ENST00000505182 232 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 HMGB3P13-201ENST00000511263 607 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AP001207.2-201ENST00000519490 539 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 ARL2BPP5-201ENST00000523141 481 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 OR8L1P-201ENST00000534005 955 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AGGF1P8-201ENST00000562979 1000 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 MIR3912-201ENST00000577566 105 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AP001180.3-201ENST00000582221 145 ntBASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC6.6□□□□□ -1.35
SHROOM4Q9ULL8 ZNF807-201ENST00000328088 1707 ntBASIC6.59□□□□□ -1.35
SHROOM4Q9ULL8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SHROOM4Q9ULL8 RNU6-839P-201ENST00000363347 108 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 RNU4-51P-201ENST00000364206 140 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 RPS3AP9-201ENST00000417027 792 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AL449283.1-202ENST00000418249 604 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 C1DP1-201ENST00000426049 402 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 DPRXP1-201ENST00000426312 460 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 OR51AB1P-201ENST00000429046 620 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 MTCO1P3-201ENST00000429327 192 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 NF1P3-201ENST00000457709 450 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 IGKV2-26-201ENST00000518305 343 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AC004024.1-201ENST00000549244 247 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 AP003392.5-201ENST00000607857 415 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 PART1_2.1-201ENST00000612397 250 ntBASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SHROOM4Q9ULL8 NMD3P1-201ENST00000439704 1488 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 MIR649-201ENST00000384843 97 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AL139098.1-201ENST00000407291 389 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 RPL23AP33-201ENST00000442301 452 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AL031313.1-201ENST00000448435 256 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 EXOSC3P1-201ENST00000448649 500 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 KC877373.1-201ENST00000479066 408 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 RPS26P15-201ENST00000488067 348 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC012170.1-201ENST00000495139 359 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 RN7SKP209-201ENST00000516888 304 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AL121766.1-201ENST00000547436 487 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 AC010975.3-201ENST00000618727 978 ntBASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
SHROOM4Q9ULL8 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 RNU6-492P-201ENST00000363035 104 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 RNU6-251P-201ENST00000363235 104 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 MIR217-201ENST00000384817 110 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 SSXP10-201ENST00000402595 565 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 HSPE1P8-201ENST00000406997 288 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 MTHFD2P2-201ENST00000407725 247 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 RNU6-584P-201ENST00000410350 95 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 RNU4-47P-201ENST00000410876 114 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 RNA5SP39-201ENST00000411245 120 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 MTND4P22-201ENST00000413116 1169 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC009237.2-201ENST00000421358 284 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 OR6C73P-201ENST00000546432 358 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC005476.1-201ENST00000554427 397 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC104984.5-201ENST00000586878 94 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 KLKP1-201ENST00000595979 403 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 GAS5-AS1-201ENST00000602767 694 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC021749.1-201ENST00000604322 607 ntBASIC6.57□□□□□ -1.36
SHROOM4Q9ULL8 AC015813.4-201ENST00000610469 179 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms