Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 RPL37P6-201ENST00000460682 294 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC092324.1-201ENST00000468671 324 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC087884.1-201ENST00000469738 328 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC092865.4-201ENST00000477936 615 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AP000926.1-201ENST00000479573 241 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 SNORA58-201ENST00000505219 137 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 RNU6-1143P-201ENST00000516125 104 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AP000648.1-201ENST00000529682 397 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC025423.5-201ENST00000550230 219 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 MIR4275-201ENST00000636486 87 ntBASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
LIMD1Q9UGP4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC062022.1-201ENST00000451026 1684 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 RNU1-150P-201ENST00000362491 162 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SNORA74A-201ENST00000364089 198 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SNORA58B-201ENST00000364259 136 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 Y_RNA.447-201ENST00000384184 113 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 MIR548I3-201ENST00000408378 149 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 MIR548I1-201ENST00000408810 149 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 MIR1252-201ENST00000408861 65 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 RNU4-61P-201ENST00000411243 107 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 RPL12P34-201ENST00000424532 479 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SUMO1P3-201ENST00000439961 304 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SLC25A15P5-201ENST00000508033 253 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC097486.1-201ENST00000515331 210 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SNORA70.11-201ENST00000515987 138 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 SNORA70.13-201ENST00000516116 138 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 Y_RNA.689-201ENST00000516589 107 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 IGKV1D-22-201ENST00000518953 324 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC091193.1-201ENST00000604640 448 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AL034351.1-201ENST00000605288 668 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC004805.2-201ENST00000605382 482 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 AC116667.2-201ENST00000641075 823 ntBASIC6.4□□□□□ -1.38
LIMD1Q9UGP4 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 MAPK10-261ENST00000641050 3109 ntBASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 AL359893.1-201ENST00000447628 1580 ntBASIC6.4□□□□□ -1.39
LIMD1Q9UGP4 OR13C1P-202ENST00000641378 2919 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC092747.4-201ENST00000620519 1861 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 SNORD14.1-201ENST00000365609 90 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC096664.2-201ENST00000411843 406 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 CYCSP52-201ENST00000422857 310 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 AC245884.2-201ENST00000426257 404 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 CYCSP43-201ENST00000438233 310 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 NEFMP1-201ENST00000443423 1006 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 RNU7-138P-201ENST00000459479 64 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 RN7SL610P-201ENST00000463845 291 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 RN7SKP277-201ENST00000516895 283 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 RPA2P3-201ENST00000533268 770 ntBASIC6.39□□□□□ -1.39
LIMD1Q9UGP4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms