Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 HIGD1AP17-201ENST00000554576 276 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AP002826.1-201ENST00000608835 315 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AC092628.2-201ENST00000622492 339 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AC120349.2-201ENST00000625002 298 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AL773545.4-201ENST00000637262 310 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 AL513478.4-201ENST00000641636 310 ntBASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4AQ9BY43 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AL513185.3-201ENST00000433335 1300 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 MIR199A2-201ENST00000385289 110 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 RNU6-298P-201ENST00000390888 96 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC109780.2-201ENST00000413467 845 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 BEND7P1-201ENST00000422058 457 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC096638.2-201ENST00000434965 711 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 RPL7P15-201ENST00000461190 712 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 HMGN2P13-201ENST00000476476 274 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 RPL32P34-201ENST00000486380 400 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC093853.1-201ENST00000515689 483 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 RNU6-1225P-201ENST00000516336 65 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC022690.1-201ENST00000526681 550 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC106785.1-201ENST00000565935 262 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC090079.2-201ENST00000575289 768 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 MIR5685-201ENST00000579080 79 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC021749.1-201ENST00000604322 607 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC023158.2-201ENST00000614876 543 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC004009.2-201ENST00000623016 728 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 MIR1322-201ENST00000638013 71 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 AC005539.1-201ENST00000443768 1479 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 TAB3P1-202ENST00000452645 1634 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 MTND4P10-201ENST00000446199 1363 ntBASIC5.04□□□□□ -1.6
CHMP4AQ9BY43 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 TNPO1P3-201ENST00000436471 2662 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 MIR93-201ENST00000385024 80 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 MTATP6P27-201ENST00000416987 621 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 C1DP1-201ENST00000426049 402 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 ATP5HP2-201ENST00000433885 485 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 KCTD9P3-201ENST00000434597 1169 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 RPL36AP33-201ENST00000450395 310 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 SUMO2P5-201ENST00000506790 245 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC087369.1-201ENST00000520775 996 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 CR383656.7-201ENST00000548164 174 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 MRPS35P3-201ENST00000603189 709 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 TUG1_1.1-201ENST00000610654 145 ntBASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CHMP4AQ9BY43 IPO8P1-201ENST00000455509 3109 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 Y_RNA.126-201ENST00000363382 111 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RNU6-1122P-201ENST00000384449 107 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 HMGB1P17-201ENST00000403495 628 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RN7SKP202-201ENST00000410439 330 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 AL359073.1-201ENST00000448036 403 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RPL12P26-201ENST00000452430 487 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 ARPC3P2-201ENST00000457786 533 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RPS4XP15-201ENST00000489210 795 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 AC090453.1-201ENST00000495560 436 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 AC010265.1-201ENST00000513509 211 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 MIR2114-201ENST00000516645 80 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 RNU6-711P-201ENST00000517255 106 ntBASIC5.02□□□□□ -1.61
CHMP4AQ9BY43 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms