Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SKINT1L-201ENST00000401057 817 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AL583834.1-201ENST00000406943 343 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 RPL23AP47-201ENST00000408017 460 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 RNU4-78P-201ENST00000410940 126 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 GTF2IP23-201ENST00000423746 351 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC013262.1-201ENST00000426710 252 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 RPL31P54-201ENST00000429803 370 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 ATP5JP1-201ENST00000431631 322 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 KCTD10P1-201ENST00000434203 625 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC106707.2-201ENST00000484182 374 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 HMGB1P22-201ENST00000505315 124 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 MTCYBP37-201ENST00000510642 1133 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC112198.4-201ENST00000515450 351 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AP003066.2-201ENST00000529375 555 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AP003385.6-201ENST00000531603 374 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 LSM6P2-201ENST00000552208 177 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC012182.1-201ENST00000570133 895 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 MIR4666A-201ENST00000580160 79 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC090330.1-201ENST00000588646 764 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AP000238.1-201ENST00000608759 426 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AL161637.1-201ENST00000622380 412 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC009093.8-201ENST00000641769 292 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC116096.1-201ENST00000566804 2314 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC130650.2-201ENST00000618736 2403 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC092326.2-201ENST00000624772 1561 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC007496.3-201ENST00000624987 3443 ntBASIC3.72□□□□□ -1.81
CCDC40Q4G0X9 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.81
CCDC40Q4G0X9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 RNU4-35P-201ENST00000362588 141 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC234772.1-201ENST00000377927 937 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 TMSB4XP8-201ENST00000402089 135 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 RNA5SP31-201ENST00000411144 127 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 TMSB4XP6-201ENST00000415187 135 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 FCF1P2-201ENST00000415284 583 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 TMSB4XP1-201ENST00000424567 135 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 HSPD1P21-201ENST00000436541 245 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 HMGN1P5-201ENST00000448591 263 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 snoU13.24-201ENST00000458998 104 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 RPL7P15-201ENST00000461190 712 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL672167.3-201ENST00000465951 960 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 FTH1P2-201ENST00000466086 412 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 GAPDHP39-201ENST00000481866 979 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC026414.1-201ENST00000504046 698 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC010198.2-201ENST00000550612 259 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 VN1R87P-201ENST00000596706 487 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 CR392039.5-201ENST00000623201 510 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AL356863.1-201ENST00000623378 1080 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 AC111188.2-201ENST00000529697 1387 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 MTND4P34-201ENST00000572715 1371 ntBASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC40Q4G0X9 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AL672296.1-201ENST00000427780 2158 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 RNU6-839P-201ENST00000363347 108 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 RNVU1-3-201ENST00000364313 161 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms