Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC002075.2-201ENST00000425207 252 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 RPL23AP76-201ENST00000441860 458 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 SETD6P1-201ENST00000444575 317 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 AL133162.1-201ENST00000463228 453 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 MTND2P14-201ENST00000482139 351 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 RPS27P23-201ENST00000487608 251 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 FABP5P12-201ENST00000515543 389 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 SNORA3.4-201ENST00000515969 96 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 RNU5A-4P-201ENST00000516588 111 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC087369.1-201ENST00000520775 996 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD4P09016 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD4P09016 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 AL845331.3-202ENST00000562856 261 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 BPTFP1-201ENST00000579209 492 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD4P09016 MRPS35P3-201ENST00000603189 709 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC083899.3-201ENST00000603413 594 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AL365503.1-201ENST00000605247 905 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC096577.2-201ENST00000611455 153 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 RNVU1-4-201ENST00000612985 164 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC015967.1-201ENST00000619893 476 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AL357559.1-201ENST00000622228 274 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AC091953.5-201ENST00000622919 233 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 AL157770.1-201ENST00000623049 439 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 C2orf27A-204ENST00000623058 969 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD4P09016 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD4P09016 AC093908.1-201ENST00000623125 8092 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD4P09016 AP001486.2-201ENST00000561652 5113 ntBASIC3.46□□□□□ -1.86
HOXD4P09016 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD4P09016 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 FAM133CP-201ENST00000332869 704 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 SNORD113-6-201ENST00000363345 75 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 GSTA8P-201ENST00000404253 637 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AIMP1P1-201ENST00000418670 937 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 USP9YP31-201ENST00000431405 881 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC010468.1-201ENST00000461022 817 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC110768.1-201ENST00000509222 400 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AC008885.2-201ENST00000509506 930 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXD4P09016 RN7SKP234-201ENST00000517173 224 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD4P09016 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AL442163.2-201ENST00000553912 710 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 AL133457.1-201ENST00000564251 987 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC007599.1-201ENST00000568688 1174 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AL354943.1-201ENST00000572103 781 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC087499.8-201ENST00000578406 226 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 AC006254.3-201ENST00000603353 884 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 LLPHP1-201ENST00000603571 367 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AL354760.1-201ENST00000608357 643 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AP004247.3-201ENST00000608682 624 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 AL159169.3-201ENST00000608871 561 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD4P09016 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD4P09016 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD4P09016 SAGE4P-201ENST00000442271 3381 ntBASIC3.45□□□□□ -1.86
HOXD4P09016 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXD4P09016 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HOXD4P09016 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms