Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 DDX50P1-201ENST00000438163 2400 ntBASIC9.91□□□□□ -0.82
MSH5O43196 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC9.91□□□□□ -0.82
MSH5O43196 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 Y_RNA.78-201ENST00000362970 110 ntBASIC9.91□□□□□ -0.82
MSH5O43196 Y_RNA.290-201ENST00000364879 114 ntBASIC9.91□□□□□ -0.82
MSH5O43196 SNORA7B-201ENST00000384360 139 ntBASIC9.91□□□□□ -0.82
MSH5O43196 AL135786.1-201ENST00000415892 214 ntBASIC9.91□□□□□ -0.82
MSH5O43196 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC9.91□□□□□ -0.82
MSH5O43196 ATP5A1P8-201ENST00000423669 1291 ntBASIC9.91□□□□□ -0.82
MSH5O43196 Z98752.2-201ENST00000432727 312 ntBASIC9.91□□□□□ -0.82
MSH5O43196 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC9.91□□□□□ -0.82
MSH5O43196 AC146507.2-201ENST00000460608 476 ntBASIC9.91□□□□□ -0.82
MSH5O43196 RNA5SP400-201ENST00000517155 111 ntBASIC9.91□□□□□ -0.82
MSH5O43196 AC068631.3-201ENST00000538831 225 ntBASIC9.91□□□□□ -0.82
MSH5O43196 DNM1P33-201ENST00000565222 270 ntBASIC9.91□□□□□ -0.82
MSH5O43196 AC005070.2-201ENST00000604391 260 ntBASIC9.91□□□□□ -0.82
MSH5O43196 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC9.91□□□□□ -0.82
MSH5O43196 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
MSH5O43196 MAPK10-383ENST00000642032 3390 ntBASIC9.91□□□□□ -0.82
MSH5O43196 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 LINC00598-208ENST00000617777 2551 ntTSL 2 BASIC9.91□□□□□ -0.82
MSH5O43196 NPIPB5-209ENST00000517539 3569 ntAPPRIS P2 TSL 5 BASIC9.91□□□□□ -0.82
MSH5O43196 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
MSH5O43196 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC9.91□□□□□ -0.82
MSH5O43196 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
MSH5O43196 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
MSH5O43196 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 AC122713.2-201ENST00000624942 3335 ntBASIC9.9□□□□□ -0.82
MSH5O43196 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
MSH5O43196 GCNT1P4-201ENST00000404096 329 ntBASIC9.9□□□□□ -0.82
MSH5O43196 RN7SKP91-201ENST00000410852 288 ntBASIC9.9□□□□□ -0.82
MSH5O43196 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC9.9□□□□□ -0.82
MSH5O43196 AL512882.1-201ENST00000436086 832 ntBASIC9.9□□□□□ -0.82
MSH5O43196 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 RPL21P10-201ENST00000463521 490 ntBASIC9.9□□□□□ -0.82
MSH5O43196 RN7SL654P-201ENST00000479178 292 ntBASIC9.9□□□□□ -0.82
MSH5O43196 RN7SL267P-201ENST00000485107 261 ntBASIC9.9□□□□□ -0.82
MSH5O43196 RNU6-904P-201ENST00000516206 101 ntBASIC9.9□□□□□ -0.82
MSH5O43196 AC027369.5-201ENST00000533838 755 ntBASIC9.9□□□□□ -0.82
MSH5O43196 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC9.9□□□□□ -0.82
MSH5O43196 AC010653.3-201ENST00000635332 232 ntBASIC9.9□□□□□ -0.82
MSH5O43196 AC006453.3-201ENST00000635891 377 ntBASIC9.9□□□□□ -0.82
MSH5O43196 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC9.9□□□□□ -0.82
MSH5O43196 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
MSH5O43196 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC9.9□□□□□ -0.82
MSH5O43196 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
MSH5O43196 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC9.9□□□□□ -0.83
MSH5O43196 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC9.9□□□□□ -0.83
MSH5O43196 AC104964.2-201ENST00000562242 4641 ntBASIC9.9□□□□□ -0.83
MSH5O43196 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC9.9□□□□□ -0.83
MSH5O43196 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
MSH5O43196 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC9.9□□□□□ -0.83
MSH5O43196 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
MSH5O43196 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC9.89□□□□□ -0.83
MSH5O43196 AC112255.1-201ENST00000624070 2493 ntBASIC9.89□□□□□ -0.83
MSH5O43196 AL450124.1-201ENST00000376401 353 ntBASIC9.89□□□□□ -0.83
MSH5O43196 AC113608.1-201ENST00000398740 305 ntBASIC9.89□□□□□ -0.83
MSH5O43196 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 EIF1AXP1-201ENST00000419267 435 ntBASIC9.89□□□□□ -0.83
MSH5O43196 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC9.89□□□□□ -0.83
MSH5O43196 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC9.89□□□□□ -0.83
MSH5O43196 RPS26P56-201ENST00000444468 240 ntBASIC9.89□□□□□ -0.83
MSH5O43196 GCNT1P5-201ENST00000449274 682 ntBASIC9.89□□□□□ -0.83
MSH5O43196 RPL23AP62-201ENST00000463396 453 ntBASIC9.89□□□□□ -0.83
MSH5O43196 AC044810.1-201ENST00000480271 711 ntBASIC9.89□□□□□ -0.83
MSH5O43196 RPL10P7-201ENST00000495649 625 ntBASIC9.89□□□□□ -0.83
MSH5O43196 AC063943.2-201ENST00000495697 534 ntBASIC9.89□□□□□ -0.83
MSH5O43196 SCARNA11.1-201ENST00000516918 132 ntBASIC9.89□□□□□ -0.83
MSH5O43196 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
MSH5O43196 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC9.89□□□□□ -0.83
MSH5O43196 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC9.89□□□□□ -0.83
MSH5O43196 ACP5-208ENST00000590420 301 ntTSL 5 BASIC9.89□□□□□ -0.83
MSH5O43196 AC025946.2-201ENST00000603398 234 ntBASIC9.89□□□□□ -0.83
MSH5O43196 pRNA.12-201ENST00000614353 90 ntBASIC9.89□□□□□ -0.83
MSH5O43196 pRNA.3-201ENST00000615048 90 ntBASIC9.89□□□□□ -0.83
MSH5O43196 AL360181.4-201ENST00000621752 134 ntBASIC9.89□□□□□ -0.83
MSH5O43196 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 SPATA31C2-201ENST00000324915 3777 ntBASIC9.89□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 211 ms