Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 MIR217-201ENST00000384817 110 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNU6-55P-201ENST00000411092 107 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNU6-954P-201ENST00000411355 107 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 SDCBPP2-201ENST00000424643 885 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 MTCO1P3-201ENST00000429327 192 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 GTF2IP3-201ENST00000433887 494 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 CYCSP43-201ENST00000438233 310 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RPL23AP33-201ENST00000442301 452 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 CDC27P1-201ENST00000445384 715 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 COX6CP18-201ENST00000448769 222 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC125238.1-201ENST00000448842 249 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 RN7SL442P-201ENST00000473804 320 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNF138P1-201ENST00000502765 546 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNU1-95P-201ENST00000516357 160 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNU1-128P-201ENST00000516704 160 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RANP9-201ENST00000519957 271 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 NDUFB9P3-201ENST00000521269 501 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC021451.1-201ENST00000523498 1129 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC034105.4-201ENST00000568304 277 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AP003973.1-201ENST00000604639 691 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 RNA5SP108-201ENST00000605921 117 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC024060.1-201ENST00000607052 494 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 PART1_2.1-201ENST00000612397 250 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC104763.3-201ENST00000613765 618 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 CR392039.5-201ENST00000623201 510 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC010608.3-201ENST00000625048 527 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 AL513302.2-201ENST00000562313 1842 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC007823.1-201ENST00000569932 1566 ntBASIC3.16□□□□□ -1.9
SKA3Q8IX90 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SKA3Q8IX90 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.16□□□□□ -1.9
SKA3Q8IX90 AC007496.3-201ENST00000624987 3443 ntBASIC3.15□□□□□ -1.9
SKA3Q8IX90 AC005183.1-201ENST00000603687 1979 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 SNORD9-201ENST00000362566 104 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL133264.1-201ENST00000407157 562 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 ATP5A1P2-201ENST00000412323 255 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 RPS7P13-201ENST00000413955 498 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 NEK4P1-201ENST00000433383 879 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 SETP5-201ENST00000437270 562 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 MTCO1P53-201ENST00000441633 699 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL590399.6-201ENST00000446396 307 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC069528.1-202ENST00000482888 637 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC079203.1-201ENST00000487972 404 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 TRMT10BP1-201ENST00000519377 943 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 IGHV3-76-201ENST00000522465 295 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AP004242.1-201ENST00000533701 349 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 GTF2IP22-201ENST00000554443 182 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC007566.2-201ENST00000603642 413 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC010591.1-201ENST00000603941 649 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC024933.1-201ENST00000608472 348 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC069209.1-201ENST00000619282 651 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC123767.1-202ENST00000620407 817 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC039056.2-201ENST00000622261 511 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL391262.2-201ENST00000622466 494 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 AL512506.2-201ENST00000624472 458 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.15□□□□□ -1.91
SKA3Q8IX90 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
SKA3Q8IX90 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
SKA3Q8IX90 AC090337.1-201ENST00000579651 2074 ntBASIC3.15□□□□□ -1.91
SKA3Q8IX90 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms