Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.12□□□□□ -1.59
RNF4P78317 AL118558.2-201ENST00000556294 238 ntBASIC5.12□□□□□ -1.59
RNF4P78317 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.12□□□□□ -1.59
RNF4P78317 AL022394.1-201ENST00000606979 292 ntBASIC5.12□□□□□ -1.59
RNF4P78317 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.12□□□□□ -1.59
RNF4P78317 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
RNF4P78317 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.12□□□□□ -1.59
RNF4P78317 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
RNF4P78317 TAB3P1-202ENST00000452645 1634 ntBASIC5.12□□□□□ -1.59
RNF4P78317 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.12□□□□□ -1.59
RNF4P78317 AL360270.2-201ENST00000562952 5985 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 AC104964.3-201ENST00000606115 2860 ntBASIC5.11□□□□□ -1.59
RNF4P78317 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
RNF4P78317 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.11□□□□□ -1.59
RNF4P78317 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 RNU6-1297P-201ENST00000384415 104 ntBASIC5.11□□□□□ -1.59
RNF4P78317 U3.29-201ENST00000391296 212 ntBASIC5.11□□□□□ -1.59
RNF4P78317 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.11□□□□□ -1.59
RNF4P78317 RNU2-36P-201ENST00000410361 191 ntBASIC5.11□□□□□ -1.59
RNF4P78317 RNU6-1304P-201ENST00000411374 106 ntBASIC5.11□□□□□ -1.59
RNF4P78317 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.11□□□□□ -1.59
RNF4P78317 CHIAP3-201ENST00000423668 1133 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.11□□□□□ -1.59
RNF4P78317 CEACAMP1-201ENST00000434624 1035 ntBASIC5.11□□□□□ -1.59
RNF4P78317 PRPF38AP2-201ENST00000438179 851 ntBASIC5.11□□□□□ -1.59
RNF4P78317 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.11□□□□□ -1.59
RNF4P78317 PRPS1P1-201ENST00000445305 876 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC012512.1-201ENST00000446594 718 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC011225.1-201ENST00000457751 369 ntBASIC5.11□□□□□ -1.59
RNF4P78317 RNU7-59P-201ENST00000459101 61 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC018638.3-201ENST00000461273 132 ntBASIC5.11□□□□□ -1.59
RNF4P78317 VN1R17P-201ENST00000472048 1090 ntBASIC5.11□□□□□ -1.59
RNF4P78317 SIAH1P1-201ENST00000479411 923 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC027575.1-201ENST00000481064 460 ntBASIC5.11□□□□□ -1.59
RNF4P78317 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.11□□□□□ -1.59
RNF4P78317 BTF3P13-201ENST00000513224 490 ntBASIC5.11□□□□□ -1.59
RNF4P78317 RNU6-27P-201ENST00000516146 107 ntBASIC5.11□□□□□ -1.59
RNF4P78317 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.11□□□□□ -1.59
RNF4P78317 AP001804.3-201ENST00000525146 880 ntBASIC5.11□□□□□ -1.59
RNF4P78317 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.11□□□□□ -1.59
RNF4P78317 MIR5583-1-201ENST00000580941 59 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC006504.6-201ENST00000590142 199 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AP001330.4-201ENST00000604350 154 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AL451044.1-201ENST00000604867 238 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AL121655.1-201ENST00000605811 308 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC022467.1-201ENST00000614738 749 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AC084781.2-201ENST00000615568 161 ntBASIC5.11□□□□□ -1.59
RNF4P78317 MIR6886-201ENST00000619864 61 ntBASIC5.11□□□□□ -1.59
RNF4P78317 AP001005.3-201ENST00000622049 129 ntBASIC5.11□□□□□ -1.59
RNF4P78317 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.11□□□□□ -1.59
RNF4P78317 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.11□□□□□ -1.59
RNF4P78317 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.11□□□□□ -1.59
RNF4P78317 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
RNF4P78317 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
RNF4P78317 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 Z95327.2-201ENST00000414579 1873 ntBASIC5.11□□□□□ -1.59
RNF4P78317 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.11□□□□□ -1.59
RNF4P78317 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 ZBTB8OSP1-201ENST00000342688 498 ntBASIC5.1□□□□□ -1.59
RNF4P78317 Y_RNA.128-201ENST00000363391 112 ntBASIC5.1□□□□□ -1.59
RNF4P78317 SNORA63C-201ENST00000364578 129 ntBASIC5.1□□□□□ -1.59
RNF4P78317 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.1□□□□□ -1.59
RNF4P78317 SNORD116-29-201ENST00000384516 83 ntBASIC5.1□□□□□ -1.59
RNF4P78317 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
RNF4P78317 RNU4-14P-201ENST00000410858 122 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 OR6C66P-201ENST00000414917 930 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms