Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.31□□□□□ -1.88
COL18A1P39060 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.31□□□□□ -1.88
COL18A1P39060 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
COL18A1P39060 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.31□□□□□ -1.88
COL18A1P39060 HSPA8P4-201ENST00000511877 1920 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL18A1P39060 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.31□□□□□ -1.88
COL18A1P39060 AC004925.1-201ENST00000624256 2706 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 ZNF72P-201ENST00000425869 1908 ntBASIC3.31□□□□□ -1.88
COL18A1P39060 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL18A1P39060 RNU1-100P-201ENST00000365255 165 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 NCSTNP1-201ENST00000406229 144 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.3□□□□□ -1.88
COL18A1P39060 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 HIGD1AP2-201ENST00000446367 280 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC022431.1-201ENST00000450941 438 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.3□□□□□ -1.88
COL18A1P39060 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC3.3□□□□□ -1.88
COL18A1P39060 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL18A1P39060 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.3□□□□□ -1.88
COL18A1P39060 U4.3-201ENST00000621047 82 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 FRG1DP-201ENST00000635586 771 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL18A1P39060 MTCO1P9-201ENST00000505577 1534 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL18A1P39060 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.3□□□□□ -1.88
COL18A1P39060 RNU6-697P-201ENST00000363348 107 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL18A1P39060 MIR708-201ENST00000390708 88 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AL512633.1-201ENST00000399931 655 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 USP9YP20-201ENST00000419224 558 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 DPH3P2-201ENST00000422618 250 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 MTND6P18-201ENST00000439477 513 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.3□□□□□ -1.88
COL18A1P39060 AC113398.2-201ENST00000507630 558 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 AP000857.1-201ENST00000532151 543 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 NPM1P35-201ENST00000533043 868 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.3□□□□□ -1.88
COL18A1P39060 YWHAZP1-201ENST00000556286 722 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC015712.3-201ENST00000559380 164 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.3□□□□□ -1.88
COL18A1P39060 AC068313.1-201ENST00000604028 1008 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC023813.4-201ENST00000607580 580 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AP005212.4-201ENST00000614206 710 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC069528.2-201ENST00000624849 1991 ntBASIC3.3□□□□□ -1.88
COL18A1P39060 AC009487.4-201ENST00000624969 3585 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL18A1P39060 AL450263.2-201ENST00000439400 589 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 GAPDHP39-201ENST00000481866 979 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 OR4G11P-201ENST00000492842 939 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.29□□□□□ -1.88
COL18A1P39060 AC090281.1-201ENST00000523019 276 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.29□□□□□ -1.88
COL18A1P39060 AC099063.3-201ENST00000642066 185 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL18A1P39060 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL18A1P39060 MTND5P19-201ENST00000424872 1794 ntBASIC3.29□□□□□ -1.88
COL18A1P39060 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL18A1P39060 AC019155.1-201ENST00000382242 574 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL18A1P39060 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.28□□□□□ -1.88
COL18A1P39060 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 FGF7P3-201ENST00000454645 303 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 RPL9P32-201ENST00000464118 620 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 AC009063.1-201ENST00000563342 702 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 AC004241.3-201ENST00000611728 517 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL18A1P39060 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.28□□□□□ -1.88
COL18A1P39060 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC3.28□□□□□ -1.88
COL18A1P39060 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL18A1P39060 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL18A1P39060 AC123912.3-201ENST00000600907 1367 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 MTND5P6-201ENST00000422338 1798 ntBASIC3.28□□□□□ -1.88
COL18A1P39060 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
COL18A1P39060 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.28□□□□□ -1.89
COL18A1P39060 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.28□□□□□ -1.89
COL18A1P39060 MRPL50P4-201ENST00000446432 475 ntBASIC3.28□□□□□ -1.89
COL18A1P39060 TXNP6-201ENST00000510190 310 ntBASIC3.28□□□□□ -1.89
COL18A1P39060 AC107918.3-201ENST00000533272 382 ntBASIC3.28□□□□□ -1.89
COL18A1P39060 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.28□□□□□ -1.89
COL18A1P39060 NTAN1P1-201ENST00000603150 646 ntBASIC3.28□□□□□ -1.89
COL18A1P39060 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.28□□□□□ -1.89
COL18A1P39060 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL18A1P39060 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL18A1P39060 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL18A1P39060 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL18A1P39060 AC026523.2-201ENST00000625039 7739 ntBASIC3.27□□□□□ -1.89
COL18A1P39060 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
COL18A1P39060 UBE2V2P1-201ENST00000434717 398 ntBASIC3.27□□□□□ -1.89
COL18A1P39060 AL662791.1-201ENST00000441992 928 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms