Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SERF1AP1-201ENST00000514575 187 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 BX510359.5-201ENST00000515651 304 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 Y_RNA.662-201ENST00000516028 97 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 RNA5SP228-201ENST00000516232 133 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 RNU6-323P-201ENST00000521915 107 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.4□□□□□ -1.54
COL8A1P27658 MIR3144-201ENST00000579460 79 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.4□□□□□ -1.54
COL8A1P27658 AC011921.3-201ENST00000605540 361 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.4□□□□□ -1.54
COL8A1P27658 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.4□□□□□ -1.55
COL8A1P27658 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 WBP11P1-201ENST00000562560 1931 ntBASIC5.4□□□□□ -1.55
COL8A1P27658 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
COL8A1P27658 AC110597.1-201ENST00000562669 3176 ntBASIC5.4□□□□□ -1.55
COL8A1P27658 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
COL8A1P27658 TCP11X1-202ENST00000622971 1372 ntBASIC5.4□□□□□ -1.55
COL8A1P27658 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
COL8A1P27658 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
COL8A1P27658 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL8A1P27658 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
COL8A1P27658 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL8A1P27658 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 THAP12P4-201ENST00000528321 2266 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.39□□□□□ -1.55
COL8A1P27658 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 RNU6-215P-201ENST00000365169 102 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 SNORA51.6-201ENST00000384151 125 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 MIR215-201ENST00000384858 110 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 RPL30P2-201ENST00000414021 291 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC114491.1-201ENST00000416095 246 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 FAR2P4-202ENST00000425399 584 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 CALM2P2-201ENST00000428512 440 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 AL645568.3-201ENST00000433683 316 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AL353597.2-202ENST00000434901 373 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 CYCSP51-201ENST00000443545 318 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 EEF1B2P6-201ENST00000445713 673 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 RPL23AP64-201ENST00000469465 435 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC087884.1-201ENST00000469738 328 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC117503.1-201ENST00000472241 394 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AP000797.2-201ENST00000475768 606 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 MRPL42P6-201ENST00000486397 371 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 SNORA70.20-201ENST00000516848 126 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC144568.1-201ENST00000520139 137 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 HNRNPCP4-201ENST00000571636 900 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 MIR4776-2-201ENST00000580204 80 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.39□□□□□ -1.55
COL8A1P27658 DLEU2_2.2-201ENST00000615474 90 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC123768.4-201ENST00000616244 701 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.39□□□□□ -1.55
COL8A1P27658 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 AC022325.1-201ENST00000502748 2199 ntBASIC5.39□□□□□ -1.55
COL8A1P27658 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
COL8A1P27658 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
COL8A1P27658 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL8A1P27658 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC5.39□□□□□ -1.55
COL8A1P27658 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.38□□□□□ -1.55
COL8A1P27658 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL8A1P27658 AL138713.1-201ENST00000624026 2130 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 AC020658.2-201ENST00000559030 4020 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL8A1P27658 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.38□□□□□ -1.55
COL8A1P27658 CLCA3P-203ENST00000490028 2781 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 EIF2AP4-201ENST00000424793 1781 ntBASIC5.38□□□□□ -1.55
COL8A1P27658 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms